Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04962 ATGGAAGGAGGATCTGGCGAGAAGTGGAAGACAGTCTACAGAGAGTGTTTGAGAAACCATGCAGCCAGTCTCGGAAGCTACGCCACCGATGGGTGTGGGGAGTTCACGGTGGACAGCGGGGGGCTGCAATGCGTGGCGTGTGGGTGCCACCGGAACTTTCACCGGAAAGTGAAGTATCCGGTGGGTCCGGAGAGCCCTGAAGCCATGGATTACGGTGGTGAGGGAGGGAGTAAGAAGCGGTTCAGGTCGAAATTCAGCACAGATCAGAAGGAGAAGATGCTGGCTTTTGCGGAGAAAATTGGTTGGAAGCTTCAAAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTTAGTAGGCAAGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCCTCTTCTTCTGCTTCAGCTTCAGCTTCCACAGGAAACATCTCCTCCCTCACCCATTAA 474 0.5127 MEGGSGEKWKTVYRECLRNHAASLGSYATDGCGEFTVDSGGLQCVACGCHRNFHRKVKYPVGPESPEAMDYGGEGGSKKRFRSKFSTDQKEKMLAFAEKIGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASASTGNISSLTH 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04962 157 SUPERFAMILY Homeodomain-like 69 136 IPR009057 -
Vimu11g04962 157 MobiDBLite consensus disorder prediction 135 157 - -
Vimu11g04962 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 137 - -
Vimu11g04962 157 Pfam ZF-HD protein dimerisation region 11 57 IPR006456 -
Vimu11g04962 157 Gene3D - 65 142 - -
Vimu11g04962 157 NCBIfam homeobox domain, ZF-HD class 78 136 IPR006455 -
Vimu11g04962 157 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 13 56 IPR006456 -
Vimu11g04962 157 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 57 IPR006456 -
Vimu11g04962 157 FunFam Zinc-finger homeodomain protein 2 66 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04962 Vimu-Chr11 68950126 68950599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04962 10 137 ZF-HD Transcription Factor Family AT4G24660 42.197 8.04e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu11g04962 ZF-HD_dimer 8.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04962 - - ccaj:109799743 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04962 11 68950126 68950599 Vimu8g01692 8 22754989 22756221 PCT