Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04952 ATGCAGGATAAATCTCACTCAAGCTTCACCCGTTGTTGCGCCGCTACCACTCCCACGCGCCGCCGCCGATTCCTCATTCATCCTCATAATCGGTGGTATCTGTTGTGGAAGCACTTCATTCTGATATGGGCGATTTACTCTTCATTCTTCACTCCCATGGAGTTCGGTTTCTTCAGAGGCTTACCTAACAACATATTTCTCCTTGACATAGCGGGGCAATTGGTATTTCTGATGGACATGGTGGTACAGTTCTTGGTGGGGTATCACGAACTTCACTCCAACTCACTCTCCTTGATCGTCGACCATTACCAGATCGCCACCAGGTACCTCAAGTCTCGCTTCATCTTCGACCTCCTCGCATGTCTCCCATGGGACTTCATTTACAAGCGCACCAACAACAACGAGCTCCTCCGTTCTCTGCTCTGGATCAGACTCGCTCGTGCTTCTCGTGTCACCCAATTCCTCGAAACCCTCGAGAAGGATACAAGGATCAATTACTTGTTCACCAGAATCCTCAAACTCTTCGTCGTTGAACTTTACTGCACTCACACCGCTGCTTGCATTTTTTACTATCTTGCCACCACTCTGCCCTCTTCCCAGGAGGGTTACACCTGGATCGGTAGCTTGAAGATGGGAGACTATGCATATTCTGACTTCCGACACATCGATCTCTGGAAGCGTTATGTCACCTCCCTCTACTTTGCCGTTGTTACCATGGCCACCGTTGGCTACGGAGAAATCCACGCAGTCAACGTTCGTGAAATGATATTCGTCATGGTTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTCCTCGGCAACATGACTGCGTTGATTGTGAAAGGGTCTAAGACCGAGAGATTCAGAGATAAAATGTCTGATATTAGTAAGTTCTTCGATAAGAACAAACTGGACAGCCAGATATGTCACCAAATTAAAGATCACTTGAGATTAAAGTTTGATCGAAGTTATAACGGATCTTTTATTCTTCAGGAGATACCAACCACCATTCGCAAGAAGATTTCAATAAGCCTGTACGAACAGTTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTTCAGGGTTTATAAAGCATATCGCAACCAAAGTGGAGGAAGAGTTTTTCCTCCCAGGAGAATTAGTTACGGAGCAAGGAGATGTCGCAGATAAACTCTACTTTGTATATCATGGTGAGATGCGTGAGATGAAGAGGGAAGAGGGTGATACAGAAGAAGAGACGATCACGTTGCAGACCTATAGTTCTTTCGGCCATGTTTCTTTTTTTTGCAATATACCTCAAAGTTCTACAGTTGAAGCTCATGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTTTAGATGGTCGTGTTGTGTTGAACAATCTCCGCGAGGTAAAAGATTTAAATTTCCAGCGTAAGCTTTTGTTATCAGACTTCAACCTCACTATTGGAAGCATGGAAATAGAGTTGGCTACAAGGCTCAACTGTGCTGCCCATGATGGTCATCTTGATCTTGTCAAACGTTTGATTGGGTTTGGGGCAGATCCCAACAAAACTGATTATGACGGAAGAACTCCCTTGCATATCTCTGCATCAAAAGGATATGAGGATATTTCTTCTTATCTTGTTGAACAAGGAGTATGCATCGATACAGCAGGTTTGGCATTATACTTTATTAAACATGCATCTTTGAAGCGAAAAACACTTTTCGTTTTGAAACATCCATTTGTTTTAGATAAATTTGGCACCACTCCCTTACTTGAAGCCCTCAAGAATGGACATGAAGATGTGGCATCTGTACTTGTTAACGCGGGAGCTATCCTTGCTATTGAAGATGTTGGCAATTTTCTCTGCACGACAGTTGCAAGGAAGGAGTTTGACTTTTTGAAAAGGATTCTAGCTTGTGGTATTAATCCAAATGCAAAAAATTATGATCAGCGTACCCCTCTTCACATTGCTGCCTCTGAGGGCTTCTTTACAATGGTTGAGTTACTTCTAGTGGCAGGAGCAAGTGTTTTATCCAAGGACAGGTATGGTCCAAATATTGAGTGGGGAAATACACCTCTTCATGAAGCTCATACGTGTGGAAATAGAAATATGATCAAATTGCTTGAAGTTGCTAAAGTTTCTCAGTTGGCTGAACTTTGGCATTTGAACCTGGGAATGCTAAATACTCTGCACTTCCTTCTGGGTTTTGATGTGAGGGATGCTTGGATTCTCATGTTTGCAACACCAGTGCTGCAGTCAACAAATGAAATTCCTAAAAAGAGATGTACAGTGTATCCTTTCCACCCATGGGATCACAAAGCGAGTAAAAGGGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTGAAGAACTTATAAAGGAAGCAGGGAAACATTTGGAAACTACGAACAATTCCTACATTTTGTCAGAAGAAGGTGGAAAAGTTCTTCACGTAGACATGATTAACAACGATGAGAAGTTATTTGTAGTAAGTGAAGCACAAAATGAAGTGAGATTATCTGGTCATCCAATTCCAAGTGTGCAGGACATGAATCTCGTACCTTTCAACATTGATCTTTTCTTAAGGTTCTTGAAATCGGAATCCATGCATTCTACGGCGCTGCCAATACCAGCAAAAGCTTCTGAAAGGCACCCACTTGCAGGGCCTCGCAGCAGCTTCTTTACCAGAAGAGGAATCGCCAACGCATTGCCATAA 2736 0.4291 MQDKSHSSFTRCCAATTPTRRRRFLIHPHNRWYLLWKHFILIWAIYSSFFTPMEFGFFRGLPNNIFLLDIAGQLVFLMDMVVQFLVGYHELHSNSLSLIVDHYQIATRYLKSRFIFDLLACLPWDFIYKRTNNNELLRSLLWIRLARASRVTQFLETLEKDTRINYLFTRILKLFVVELYCTHTAACIFYYLATTLPSSQEGYTWIGSLKMGDYAYSDFRHIDLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFVMVYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDISKFFDKNKLDSQICHQIKDHLRLKFDRSYNGSFILQEIPTTIRKKISISLYEQFIQKVSLFKGCSSGFIKHIATKVEEEFFLPGELVTEQGDVADKLYFVYHGEMREMKREEGDTEEETITLQTYSSFGHVSFFCNIPQSSTVEAHEFCKVLRLDKKSFTEILKIYFLDGRVVLNNLREVKDLNFQRKLLLSDFNLTIGSMEIELATRLNCAAHDGHLDLVKRLIGFGADPNKTDYDGRTPLHISASKGYEDISSYLVEQGVCIDTAGLALYFIKHASLKRKTLFVLKHPFVLDKFGTTPLLEALKNGHEDVASVLVNAGAILAIEDVGNFLCTTVARKEFDFLKRILACGINPNAKNYDQRTPLHIAASEGFFTMVELLLVAGASVLSKDRYGPNIEWGNTPLHEAHTCGNRNMIKLLEVAKVSQLAELWHLNLGMLNTLHFLLGFDVRDAWILMFATPVLQSTNEIPKKRCTVYPFHPWDHKASKREGVVLWVPQSIEELIKEAGKHLETTNNSYILSEEGGKVLHVDMINNDEKLFVVSEAQNEVRLSGHPIPSVQDMNLVPFNIDLFLRFLKSESMHSTALPIPAKASERHPLAGPRSSFFTRRGIANALP 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04952 911 FunFam Potassium channel KAT3 35 282 - -
Vimu11g04952 911 Pfam Cyclic nucleotide-binding domain 376 460 IPR000595 -
Vimu11g04952 911 CDD CAP_ED 356 470 IPR000595 -
Vimu11g04952 911 PANTHER POTASSIUM CHANNEL AKT1 19 840 IPR045319 GO:0005249|GO:0006813
Vimu11g04952 911 Pfam Ankyrin repeats (3 copies) 636 715 IPR002110 GO:0005515
Vimu11g04952 911 Pfam Ankyrin repeats (many copies) 507 554 IPR002110 GO:0005515
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat region circular profile. 656 688 - -
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat profile. 533 565 IPR002110 GO:0005515
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat region circular profile. 592 617 - -
Vimu11g04952 911 SUPERFAMILY Ankyrin repeat 462 715 IPR036770 -
Vimu11g04952 911 ProSiteProfiles cAMP/cGMP binding motif profile. 356 459 IPR000595 -
Vimu11g04952 911 SUPERFAMILY cAMP-binding domain-like 284 474 IPR018490 -
Vimu11g04952 911 SMART ANK_2a 695 724 IPR002110 GO:0005515
Vimu11g04952 911 SMART ANK_2a 533 562 IPR002110 GO:0005515
Vimu11g04952 911 SMART ANK_2a 592 621 IPR002110 GO:0005515
Vimu11g04952 911 SMART ANK_2a 656 685 IPR002110 GO:0005515
Vimu11g04952 911 SMART ANK_2a 500 529 IPR002110 GO:0005515
Vimu11g04952 911 FunFam Potassium channel KAT2 344 480 - -
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat profile. 500 532 IPR002110 GO:0005515
Vimu11g04952 911 SUPERFAMILY Voltage-gated potassium channels 27 281 - -
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Vimu11g04952 911 Pfam KHA, dimerisation domain of potassium ion channel 767 836 IPR021789 -
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat region circular profile. 500 531 - -
Vimu11g04952 911 PRINTS Ankyrin repeat signature 672 686 IPR002110 GO:0005515
Vimu11g04952 911 PRINTS Ankyrin repeat signature 534 549 IPR002110 GO:0005515
Vimu11g04952 911 Gene3D Jelly Rolls 327 486 IPR014710 -
Vimu11g04952 911 PRINTS EAG/ELK/ERG potassium channel family signature 69 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu11g04952 911 PRINTS EAG/ELK/ERG potassium channel family signature 272 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu11g04952 911 PRINTS EAG/ELK/ERG potassium channel family signature 180 190 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu11g04952 911 PRINTS EAG/ELK/ERG potassium channel family signature 228 245 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu11g04952 911 SMART cnmp_10 356 474 IPR000595 -
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat region circular profile. 533 561 - -
Vimu11g04952 911 Pfam Ion transport protein 35 281 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu11g04952 911 Gene3D - 626 726 IPR036770 -
Vimu11g04952 911 Gene3D - 500 625 IPR036770 -
Vimu11g04952 911 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Vimu11g04952 911 Gene3D - 35 282 - -
Vimu11g04952 911 ProSiteProfiles KHA domain profile. 768 854 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04952 Vimu-Chr11 68903826 68908817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04952 23 688 Ion Channels AT5G37500 54.797 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04952 K21867 - gmx:100798698 1217.22