Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04950 ATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAAGAATGGATTCGTAGAGGATCTACCGATCAGAGTCAGACTCAGATGCAGAATCAGAATCAAAATGGTGCCGCCGCCTCCGCCGCCATCGCTGCTGGTTCCTCCAATACAACAAATCGCCATAGGAGGAGCGGTCCTATTCCTAGTCACAATCCCAATCCTAATCCCAATCCCAATCCCAATCCCAAGAATAATGTGCAGAAGAGATTCAATTCGAGGGACTCTAATTTGCCCCAGCTGTTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTGCGGTCGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCGCCAATCTGGTCTTGCTCTAGTTGCTTCTCCATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGTGCTCCCACTTCTGTGGACGTGTCCGTGGACAAGAATCAGCGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCATCCAAGGAGATTCGGTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCTTCCGACTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCCCTTGAAAGGGAGCTTGGGGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCATTTGCACCCCCACGTTTGTGTCCTTGTGGGAAGAAAAATGTTACCACCCGTTGTTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGGCATCGGTGTGAACAAATCTGTCATCTGGGACCTTGTGATCCTTGTAAGATTCCTGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAGCTCATTCTTTGTGGGGAAATGGCTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGCGGTTCAACCTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATTGAGACGTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTGTTACCATCCCATATCAAGACATGCTGTTGTGGGAAAACTAGATTGAAGCAGGAACGACAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCACTGTGAAGAGCCATGCCACGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGCGGCTCTACTTCCCGAACAGTGGAGTGCTGTAAGACAAAAGTGGACGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAGGAATTGTGGAAGGCATAGATGCAGTGAACGTTGTTGTCCACTTTCTAATCCAAATAATAGTCAAATTGCGGATTGGGATCCACACTTCTGTTCATTACCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTCACATCCAGCGTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATACCCTGTGGTTCAAAGGATATTAGATGCAATAAACTATGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGTAGAACATGTCACCTCCCACCTTGTGATAATCCATCTACAGTGCCGGGTAGCCGTGCCTCTTGCGGGCAAACATGTGGTGCTCCAAGAAGAGACTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGACACGCGATGCGAATTCTCTGTCACAATTACATGCTCTTGTGGCCGAATAACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTCTGCAAATTATAATGCTGATGCTGTACACGAAGCTTCCATTATCCAAAAGTTGCCTGTGTTGCTTCAACCTGTTGCTGCAAATGGCAAGAAAGTTCCTCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAACGTAAACGAGTACTTGCAGATGCCTTTGAGATAAACGCTCCAAATCTGGATTCCCTCCATTTTGGTGACAATCCTGTTGCTTCTGAATTGCTTGTTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCCAAAAATCCATATTTTCTCTCCCATGTTAAAGGACAAAAGAGATGCAGTGAGGATAATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCCAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGAACTACAACTGTAAATGCACCCCTTCCTCCTGCATTCGATCCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTACCAAGGGAGGCAGATATCAGTGCACTGGTGCTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTAGTGATTGTTCCGAATGTTGGGGCATCAGCAGCATCTTCAGCCACCAATGCTTGGGGAGGATCTGGGACAATGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGGGGTAATCCGTGGAAAAAAGATGTTCAAGAGCCAGGTTGGAAAGATTCTTGGGGTGAGGAGGAGTGGGCTACTGGTTCTGCTAATGTACATTTGCCTATTCAGAAGAAAGATTCTCTCATATCTACTTCAGTAAACCCTTGGAGTGTCTTAAGTCAAGAATCTTCTTCAAGTTCATCTGCTGCAGCTGTTAAAGTTGATGTTTCCAGGGAACACTCAGAAAGTAGTGCTGTCACAAACTTGGAGTCTCATGATGGCGGTTCAAATCTAGGACAGCATGCAGGAAACTTGGATACTTTAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3255 0.471 MSSQERSQRSRVPRQEWIRRGSTDQSQTQMQNQNQNGAAASAAIAAGSSNTTNRHRRSGPIPSHNPNPNPNPNPNPKNNVQKRFNSRDSNLPQLLQEIQEKLMKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCKIPVNASCFCSKRTELILCGEMALKGEIKTEGGVFSCGSTCGKKLGCGNHICIETCHPGSCGECGLLPSHIKTCCCGKTRLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEPCHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKRNCGRHRCSERCCPLSNPNNSQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSTVPGSRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCEFSVTITCSCGRITANVPCDAGGSSANYNADAVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEINAPNLDSLHFGDNPVASELLVDMLRRDPKWVLSVEERCKVLVLGKNRGNTQGPKIHIFSPMLKDKRDAVRIIAERWKLAVYVAGREPKRFVVVHVTPKSRAPARVLGVKGTTTVNAPLPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVIVPNVGASAASSATNAWGGSGTMKGGGSLAALKGGNPWKKDVQEPGWKDSWGEEEWATGSANVHLPIQKKDSLISTSVNPWSVLSQESSSSSSAAAVKVDVSREHSESSAVTNLESHDGGSNLGQHAGNLDTLEDSEVVDDWEKACE 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04950 1084 MobiDBLite consensus disorder prediction 1 84 - -
Vimu11g04950 1084 CDD NF-X1-zinc-finger 263 311 - -
Vimu11g04950 1084 CDD NF-X1-zinc-finger 481 524 - -
Vimu11g04950 1084 CDD NF-X1-zinc-finger 538 586 - -
Vimu11g04950 1084 ProSiteProfiles Zinc finger PHD-type profile. 106 167 IPR019787 -
Vimu11g04950 1084 CDD NF-X1-zinc-finger 628 677 - -
Vimu11g04950 1084 MobiDBLite consensus disorder prediction 1043 1066 - -
Vimu11g04950 1084 CDD NF-X1-zinc-finger 327 370 - -
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 453 464 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 632 657 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 491 508 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 273 291 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 395 412 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 601 616 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 220 235 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 337 354 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 Pfam NF-X1 type zinc finger 555 565 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 17 991 IPR034078 GO:0003700
Vimu11g04950 1084 ProSiteProfiles Zinc finger RING-type profile. 109 165 IPR001841 -
Vimu11g04950 1084 CDD RING-CH-C4HC3_NFX1-like 108 165 - -
Vimu11g04950 1084 MobiDBLite consensus disorder prediction 1022 1084 - -
Vimu11g04950 1084 SUPERFAMILY RING/U-box 99 168 - -
Vimu11g04950 1084 MobiDBLite consensus disorder prediction 19 62 - -
Vimu11g04950 1084 CDD NF-X1-zinc-finger 198 256 - -
Vimu11g04950 1084 SMART znfxneu3 218 236 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 601 630 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 491 510 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 337 356 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 273 292 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 639 660 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 453 483 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 395 414 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 SMART znfxneu3 548 566 IPR000967 GO:0005634|GO:0008270
Vimu11g04950 1084 CDD NF-X1-zinc-finger 385 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04950 Vimu-Chr11 68890217 68895404 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vimu11g04950 zf-NF-X1 1.7e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04950 K12236 - gmx:106799700 1890.16