Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04948 ATGGGAATCTGGTTGTTGGGTGCTGTGGTGAGTCCAACTTCTTCTGCATCTTCTGTGCTTGTGCTTCTGTTTCTGGGTCTGTTTGGTTGCCGCCACTCACCAATGCTGCCTCACAAGCACACTCTCGTGGTTGTGGCGGCCACGCTGGCGCTCATGCTCGCAGCAACATATGCAGATCTGGCTGCCGAGCGAGCCGCATTGCTCGCTCTCCGCTCTGCGGTCGGCGGCAGAACCCTCTTCTGGAACGCCACCAGGGACAGCCCCTGCACCTGGGCTGGCGTCCAATGCGAGCGCGACCACGTCGTCGAGCTCCACCTTCCCGGCGTCGCTCTCTCCGGCCAAATCCCTGTCGGAATATTCGGCAATCTGACACAGTTGCGCACCCTCAGTCTCCGCTTCAACGCGCTGCGGGGTTCCCTGCCTTCAGATCTGGCGAAGTGCGTGAACCTTCGGAACCTGTACATTCAGCGGAACCTGCTTAGCGGCGCTATCCCGTCGTTCTTGTTCGAGTTACCCGACTTGGTTCGCTTGAACATGGGCTTCAACAACTTCTCAGGCCCATTTCCGACCGGCTTCAACAGCCTGACCCGGTTGAAGACTCTGTTTGTGGAAAACAACCAGCTCTCCGGCCCAATCCCCGACTTGAGCAAACTGAGCCTGGATCAGTTCAACGTCTCCTACAACCTCCTCAACGGCTCTGTCCCTCTCAAGCTTCGGACATTCCCTCAGGATTCCTTTATTGGCAACTCCCTCTGCGGCCGCCCACTCTCTCTCTGCCCCGGAGATATCGCCGATCCTATCTCCGTCGACAACAACTCCAAGCCAAACAGCCACACCTCCCACAAGTTATCTGCCGGCGCCATTGCGGGGATTGTTGTCGGATCGGTCGTGTTTCTTCTGCTGCTCGTTTTCCTCTTAATTTTCCTGTGCCGGAGCAAAACTGCCAAGAAGACCAGCGCGGTCGACATTGCTACTGTCAAACATCCTGAGGCCGATGCTCCGGTTCTTGCGGAGAAGGGGGTTCCGGATGTCGAGAACGGCGGTCATGCCAACGGCAATTCTGCGGCGGCTGTGGCTGCTGTTTCGGCGGGGAACAAGGCGGAAGTGAACGGTGGTGGGGCAGCGAAGAAGTTGGTGTTTTTCGGGAATGCGGCTAGGGCGTTCGATTTGGAGGATTTGCTCAGGGCTTCGGCGGAGGTTTTGGGGAAAGGAACTTTCGGGACGGCGTATAAGGCGGTGCTGGAGGCAGGGCCAGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCTGAGAAGGAGTTTAAGGAGAAGATTGAAGCGGTGGGAGCAATGGATCATGAGAGTTTGGTTCCTCTCAGAGCTTTCTATTTCAGTAGGGATGAGAAGCTCCTTGTGTATGATTACTTGCCCATGGGAAGCTTGTCTGCACTTTTACATGGTTAG 1446 0.5643 MGIWLLGAVVSPTSSASSVLVLLFLGLFGCRHSPMLPHKHTLVVVAATLALMLAATYADLAAERAALLALRSAVGGRTLFWNATRDSPCTWAGVQCERDHVVELHLPGVALSGQIPVGIFGNLTQLRTLSLRFNALRGSLPSDLAKCVNLRNLYIQRNLLSGAIPSFLFELPDLVRLNMGFNNFSGPFPTGFNSLTRLKTLFVENNQLSGPIPDLSKLSLDQFNVSYNLLNGSVPLKLRTFPQDSFIGNSLCGRPLSLCPGDIADPISVDNNSKPNSHTSHKLSAGAIAGIVVGSVVFLLLLVFLLIFLCRSKTAKKTSAVDIATVKHPEADAPVLAEKGVPDVENGGHANGNSAAAVAAVSAGNKAEVNGGGAAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAFYFSRDEKLLVYDYLPMGSLSALLHG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04948 481 PANTHER OS05G0588300 PROTEIN 44 480 - -
Vimu11g04948 481 Gene3D Ribonuclease Inhibitor 62 170 IPR032675 -
Vimu11g04948 481 SUPERFAMILY Protein kinase-like (PK-like) 399 480 IPR011009 -
Vimu11g04948 481 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Vimu11g04948 481 ProSiteProfiles Protein kinase domain profile. 395 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04948 481 Gene3D Phosphorylase Kinase; domain 1 362 469 - -
Vimu11g04948 481 FunFam Probable inactive receptor kinase RLK902 60 216 - -
Vimu11g04948 481 Gene3D Ribonuclease Inhibitor 173 259 IPR032675 -
Vimu11g04948 481 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515
Vimu11g04948 481 Pfam Protein kinase domain 398 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04948 481 Pfam Leucine rich repeat N-terminal domain 61 96 IPR013210 -
Vimu11g04948 481 FunFam pollen receptor-like kinase 1 364 469 - -
Vimu11g04948 481 SUPERFAMILY L domain-like 81 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04948 Vimu-Chr11 68885150 68887192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04948 59 481 Receptor kinase-like Gene Family AT1G48480 62.269 4.48e-175 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g04948 Pkinase 3.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04948 - - gmx:100818955 666.766