Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04947 ATGAAATACGGCCTGAGGCCAAGGCTCATTCATTACTCATTAGTGTACCTACTGTGGTACGGTACCATGGGTGGTGTTTCTGATCTTTATTTGATTACAGGAAACAAAGGGGCGGGTAGGACGCCACTGAATTGGGAAGTGAGATCAGGCATTGCGCTTGGAGCCGCCCGTGGCATTGAGTACCTGCATTCACGAGGGCCTAATGTTTCTCATGGGAATATAAAGTCATCCAACATCCTCTTAACCAAGTCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACACCTCGTTGGCCCCTCCTCTACTCCCAACCGGGTCGCCGGCTACCGTGCACCTGAGGTGACTGATCCTCGCAGGGTGTCTCAGAAGGCAGACGTGTACAGTTTTGGTGTGTTACTATTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTAGACCTTCCCAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCAGACAAGCGCCCTTCAATGTCTGAAGTGGTAAGGAGCATAGAAGAGTTACGAAGGTCTAGTCTTAAAGAGGACCAGGATCAAATCCAACATGATCCCGTCAATGATATAGAATTGTAG 720 0.4861 MKYGLRPRLIHYSLVYLLWYGTMGGVSDLYLITGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIEELRRSSLKEDQDQIQHDPVNDIEL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04947 239 Pfam Protein kinase domain 50 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04947 239 Gene3D Transferase(Phosphotransferase) domain 1 29 237 - -
Vimu11g04947 239 SUPERFAMILY Protein kinase-like (PK-like) 36 216 IPR011009 -
Vimu11g04947 239 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04947 239 FunFam Probable inactive receptor kinase At1g48480 22 226 - -
Vimu11g04947 239 PANTHER OS05G0588300 PROTEIN 31 221 - -
Vimu11g04947 239 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04947 Vimu-Chr11 68883972 68884691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04947 17 220 Receptor kinase-like Gene Family AT3G17840 70.673 4.10e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g04947 Pkinase 7.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04947 - - gmx:100818955 397.512