Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04942 ATGGCGAGGCCAGAAAGGACGCGTAGAAATAAAAGCCTAGAGACTCTAATGGACTCGGACAAACCAGGAAGAGGAAGAAATGTGAACCAACTGGGACCCCAGAAGTCCACTCCTGGCTATGGCCTTGAATTCAGTAACCTCTCGTATAGTATCATAAAAAAGCAGAAAAAGGATGGTGTATGGATCAACAAAGAAACATATCTTCTCCATGACATCTCTGGCCAAGCAATAAAAGGTGAAGTTATGGCAGTCATGGGGCCTAGTGGTGCTGGCAAATCCACCTTTCTTGATGCATTGGCAGGGAGAATTGCTAGAGGGAGTCTAGAAGGATCAGTTAGAATTGATGGAAAACCAATTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACGGTTTTTGAAACATTTATGTTCGCAGCTGAAGTTAGGCTTCCTCCTTCCATTTCCAGGGCAGAAAAGAAGAAGAGGGTGTATGAACTACTTGACCAACTGGGCTTACAGGTTAATGACTTCATCCCCGTTCAGAGTGCGACACATACATATATTGGTGACGAAGGAAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGATATCATCCATAAGCCATCACTTCTGTTTCTTGACGAACCTACCTCAGGCCTTGACTCTACAAGTGCTTACAGTGTTGTAGAAAAGGTTAAAGACATAGCTCGAGGAGGAAGCGTTGTCCTTATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTGGATCAGATCACCGTCCTTGCAAGGGGAAGATTGATATATATGGGCAAGCCAGATGCACTACAAGATCACATGTCCAGATTTGGAAGGCCTGTTCCTGATGGAGAAAACAGTATTGAGTATCTTCTAGATGTTATAAGTGAATATGATCAAGCAACGGTTGGGCTTGACCCCCTAATCCAATTCCAACGTGATGGCCTGAAACCTGACCCCGCAGCCATGACCCCTGTTCCAAAAACTCCAAGGACACCTTTCAGAAGGAACGATCCTTCCTCTAAGCACTTGATTAGCCTACGTAGCCAAGGATTTACTGCGGGAACACAACAACCTTATTCTGCACAGTTTAGTTATCGCGACGAGGATGACGATGACGAGAATTTCGATAACTCCCTAGAAAGGAATAGTGTCCCAACACCAAGGAATATGACCAGTGGTGTTCACCCACGTTTGGCTTCTCAGTTCTACAAAGATTTCTCAGCCAAAGATTTCTCTATCTGGCTTTACCATGGTGTCGTAGGAACGCCGCGGCGGCAACCATCGTGGACTCCAGCAAGAACACCAGGATGGACGCCTGGGAAAACACCGATGTCAGGACCAAGAAATGCAGTTTCCTACCAACATTCTGCAGCTTATCGGTATCCTAATCGCCCAAAAACTCCTGTAGTGGATAGTCCGTCTATGGACTATTCGGAAACTTCATATGCCCCTTCTCTTGAAGGATTTGAGATTGAGGAAGTGGTTGATGAGCCAGTTTTAGGATCCAAGTACGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCGTGGCGAACAGCACTAAATGTAATTCGCACCCCGGAACTCTTCCTCTCTCGTGAGATTGTGTTAACTGTTATGGCACTTATCCTGTCCAGCATTTTTGGAAATCTGAGTCATCATTCTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTTTCCTCCAATGACGCAGTCCCATCTTTCATCATGGAGAGGTTCATCTTCATCAGGGAGACTTCCCATAACGCTTACCGTGCTTCTTCATATGTTATTTCTTCCCTCATTGTTTACCTCCCATTTTTCGCTGTTCAAGGACTCACATTTGCTGCCATAACCAGAGAAATGCTCCGCTTGAAAAGCAGTCTCTTGTATTTCTGGCTGACACTTTATGCCTCGCTTATTACTACTAATGCATATGTGATGCTTGTCAGTGCACTCGTGCCTAGTTACATCACAGGGTATGCAGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACCTGCGGTTTCTTCCTCAAGCAAACTCAGATACCCATTTATTGGAGGTGGCTTCACTATGTTTCTGCAATCAAATATCCTTTTGAGGCATTGCTAACAAATGAATTCAAGAACCTCGACTGCTACACAGGAAACAAAGCAGAATTATCCCCCGGACCATTAGGAGACTTGAAGCCCAGCAAACATCATAACTCCAGTCTGCCAGATAACTGCTTATTAGATTTTACTCCAAGAACGAGAGAAAATGAACCATCTACCGCCCCTTTTTATTCGGATAACATGCTCATATATGCTCCGGCCTGCTAA 2409 0.4475 MARPERTRRNKSLETLMDSDKPGRGRNVNQLGPQKSTPGYGLEFSNLSYSIIKKQKKDGVWINKETYLLHDISGQAIKGEVMAVMGPSGAGKSTFLDALAGRIARGSLEGSVRIDGKPITTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRAEKKKRVYELLDQLGLQVNDFIPVQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSVVLMTIHQPSFRIQMLLDQITVLARGRLIYMGKPDALQDHMSRFGRPVPDGENSIEYLLDVISEYDQATVGLDPLIQFQRDGLKPDPAAMTPVPKTPRTPFRRNDPSSKHLISLRSQGFTAGTQQPYSAQFSYRDEDDDDENFDNSLERNSVPTPRNMTSGVHPRLASQFYKDFSAKDFSIWLYHGVVGTPRRQPSWTPARTPGWTPGKTPMSGPRNAVSYQHSAAYRYPNRPKTPVVDSPSMDYSETSYAPSLEGFEIEEVVDEPVLGSKYANPWLREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSSIFGNLSHHSFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAAITREMLRLKSSLLYFWLTLYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQTQIPIYWRWLHYVSAIKYPFEALLTNEFKNLDCYTGNKAELSPGPLGDLKPSKHHNSSLPDNCLLDFTPRTRENEPSTAPFYSDNMLIYAPAC 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04942 802 Pfam ABC-2 type transporter 531 737 IPR013525 GO:0016020|GO:0140359
Vimu11g04942 802 MobiDBLite consensus disorder prediction 332 359 - -
Vimu11g04942 802 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524|GO:0016887
Vimu11g04942 802 SMART AAA_5 78 286 IPR003593 GO:0016887
Vimu11g04942 802 CDD ABCG_EPDR 42 283 - -
Vimu11g04942 802 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 301 IPR003439 GO:0005524
Vimu11g04942 802 MobiDBLite consensus disorder prediction 1 39 - -
Vimu11g04942 802 Gene3D - 42 296 IPR027417 -
Vimu11g04942 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 295 IPR027417 -
Vimu11g04942 802 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g04942 802 MobiDBLite consensus disorder prediction 444 467 - -
Vimu11g04942 802 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 743 - -
Vimu11g04942 802 MobiDBLite consensus disorder prediction 385 411 - -
Vimu11g04942 802 Pfam ABC transporter 69 229 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04942 Vimu-Chr11 68857654 68860723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04942 79 408 Calmodulin-binding Proteins AT2G36910 23.867 1.05e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04942 K05681 - gmx:100819497 1341.64