Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04927 ATGGTGAAACCAACATATGAAAGATTTTCAAAGGATTTTGTAATGGGAGGAGCAGCAGCAATCATATCAAAGACTGCTGCAGCACCAATTGAGAGAGTAAAGCTTTTATTGCAAAACCAAGGTGAAATGATTAAAAGAGGACAACTCAAAAGACCATACTTGGGCGTGTCTGATGGCTTTAAGAGGGTCTTCACAGAGGAGGGTTTGATTGCCTTTTGGAGAGGTCACCAGGCCAATGTCATCCGATACTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATTTTTGGGTATTCCAAAGAGAGAGACGGGTACATTAAGTGGTTTACTGGGAATGTGGCTTCAGGCAGTGCTGCAGGAGCAACAACTTCGCTTCTACTATATCATTTAGATTATGCACGTACACGATTGGGGACTGATTCAATAGAGTGCCGCGATACCAGTCAACGCCAGTTTAAAGGACTAATTGATGTATATAGGAAGACCTTATCAAGTGATGGAATGGCTGGATTGTACAGGGGATTTGGCATTTCTATATGGGGAATTGCCATGTATCGAGGGATGTACTTTGGTATCTATGACACCATGAAGCCTATTGTTTTAGTGGGGCCATTTGAGGGGAACTTTCTTGCTAGTTTCTTCTTAGGGTGGAGCATAACAACTTTTTCAGGGGTTTGTGCATACCCTTTTGATACATTGCGCAGGAGAATGATGCTTACCTCTGGACATCCAAACAAGTACCGTAATTCAATACATGCATTTCGTGATATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTTACAGCAAACATGCTTCTTGGTATCGCAGGAGCTGGGGTGCTTGCTGGATATGATCAGCTGAATAGCATCTCATCCAGACATAGTCACTATAACGAGACAAATCAAAGAGTTTTGAAATGA 945 0.4201 MVKPTYERFSKDFVMGGAAAIISKTAAAPIERVKLLLQNQGEMIKRGQLKRPYLGVSDGFKRVFTEEGLIAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSKERDGYIKWFTGNVASGSAAGATTSLLLYHLDYARTRLGTDSIECRDTSQRQFKGLIDVYRKTLSSDGMAGLYRGFGISIWGIAMYRGMYFGIYDTMKPIVLVGPFEGNFLASFFLGWSITTFSGVCAYPFDTLRRRMMLTSGHPNKYRNSIHAFRDIVGQEGFLALFRGVTANMLLGIAGAGVLAGYDQLNSISSRHSHYNETNQRVLK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04927 314 PRINTS Adenine nucleotide translocator signature 217 233 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g04927 314 PRINTS Adenine nucleotide translocator signature 9 21 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g04927 314 PRINTS Adenine nucleotide translocator signature 53 74 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g04927 314 PRINTS Adenine nucleotide translocator signature 112 125 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g04927 314 PRINTS Adenine nucleotide translocator signature 86 98 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g04927 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 204 IPR018108 -
Vimu11g04927 314 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
Vimu11g04927 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vimu11g04927 314 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085
Vimu11g04927 314 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085
Vimu11g04927 314 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Vimu11g04927 314 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085
Vimu11g04927 314 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 7 302 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g04927 314 Pfam Mitochondrial carrier protein 213 297 IPR018108 -
Vimu11g04927 314 Pfam Mitochondrial carrier protein 9 102 IPR018108 -
Vimu11g04927 314 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Vimu11g04927 314 SUPERFAMILY Mitochondrial carrier 8 295 IPR023395 -
Vimu11g04927 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Vimu11g04927 314 Gene3D Mitochondrial carrier domain 10 304 IPR023395 -
Vimu11g04927 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 100 IPR018108 -
Vimu11g04927 314 FunFam ADP,ATP carrier protein ER-ANT1 10 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04927 Vimu-Chr11 68784002 68786024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04927 7 302 Antiporters AT5G17400 77.365 1.34e-166 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04927 K05863 - gmx:100798418 576.244