Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04921 ATGTGGATGGTTGGTTACAACGAAGCTGCCGACTTCACCATGCCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCAGTCTCTTCTCCTAACAACACTCCAAACGCCAACTCTCCATGCTTGACCCGCATTCATCATGGCAATGATTTCTTCTCACAATATCATAATCTCGCATCAGTTGCAGATCAGGGCAAGAGAGAGTTCAACCCTCCACCTGTAGTGGTGAGTTCGAGGTGGAATCCGACCCCGGAGCAGCTGAGGGCATTGGAGGAATTGTACAGAAGAGGGACAAGAACACCGTCTGCAGAGCAAATCCAACAAATCACGGCACAGCTTCGAAGGTTTGGAAAAATTGAGGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCCGCCGAGGGTCATCACACCCGTGACTTTGATGGTAGTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACGCTTGCAAAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGATTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAGCACACAAGAAACTTAATGGAGAGGAATGCCACGTGGCATATGATGCAGTTATCTTGTCCTTCCCCTCCTACAGTTTCACCCCACTTCATAAACGCACCTCCCACCGTATCTACTGCTAGCATGGCCACCACACCCTCAATAACAGCAAGAGTAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTCATTTCACCTAACAGAGAAAACGGTGTTATCCACTTAAGCAGTATCAACACCTACACCCCGGATGATAATTCTGTGGAGTCTCAAACCCTTCAACTTTTCCCGGTGAGGAATGAGGATGAAAGCAGTGATAACATTGACCACCAAAAAGAGACAGAGGTATCTGTCTCAGCAATGAATGCCCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1086 0.4678 MWMVGYNEAADFTMPDYALNGRKLRPLMPRPVSSPNNTPNANSPCLTRIHHGNDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDGSLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAKESVSIQRAAKAAVADCRTDGWLQFDEGELQHTRNLMERNATWHMMQLSCPSPPTVSPHFINAPPTVSTASMATTPSITARVMDPKLIKTHDLSFFISPNRENGVIHLSSINTYTPDDNSVESQTLQLFPVRNEDESSDNIDHQKETEVSVSAMNAPSQFFEFLPLKN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04921 361 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 68 355 IPR044555 GO:0003700|GO:0099402
Vimu11g04921 361 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Vimu11g04921 361 CDD homeodomain 83 143 IPR001356 GO:0003677
Vimu11g04921 361 MobiDBLite consensus disorder prediction 140 162 - -
Vimu11g04921 361 MobiDBLite consensus disorder prediction 143 162 - -
Vimu11g04921 361 SMART HOX_1 79 146 IPR001356 GO:0003677
Vimu11g04921 361 Gene3D - 80 142 - -
Vimu11g04921 361 FunFam WUSCHEL-related homeobox 4 81 148 - -
Vimu11g04921 361 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Vimu11g04921 361 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04921 Vimu-Chr11 68766414 68768528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04921 1 361 Wox Gene Family AT3G18010 39.075 2.06e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu11g04921 Homeodomain 9.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04921 - - gmx:100777274 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04921 11 68766414 68768528 Vimu11g04921 11 68766414 68768528 ECH