Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04911 ATGGAGACTGCTCCAGCTCAATTAAACCATCTGGATCGCCTCACTTGGAAGCTTGCAAGGCCTGTTGCTTGGGGACTGTTGTTTGGATTTGATTGTCTTGGTTCGGGAGCTGTTTCACAAAAAAGGGGTTCTTTGGATAGTTTTCTAGATACCGGAGACCATACTTCGAGTCAGAGAGATTCATGCTTGGTCAGAGAACAAAATGGAGAGAACATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGATGATGCACAGGGGGCTACTTCATCAAAGAGCACCAAGTCCAGTGACGGTTCATCTTCCACTACCCCTAAGAAGCTTTCGAATTGGTTGCATTCAGTTTCTAATAGGCAGAGTCCCAGTCCTCCGTCTCCTAATCTAGCCAGAGGAGAAAGAATGGACCCATCTGATTCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCTGATTCAGCAAGGCGTGATTCGGAGTCTAGCGCGTCTAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAACTGGCTTTGGAGCTGAGTGCAAAAGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGGTATTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGGATCTTGACTGAGTCAACCTCTGCAAGAATGCCTTCTCTAGTAGATCTGCAAGGAAGATCAACCTCAGTTGATGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCAAACTTGTTGAAACTTGAACAAGAAGCCATGAAGATGGCTGCCAGTTCAGGAAAAGATTTTGAAGTAGTTGTAAATAGCAATTTGGTACACAAGCTTGCAATAATGGTGGCTGACTATATGGGTGGATCAGTTAAAGATCCTGAAAGCATGTCTAGAGCCTGGAGGAGTCTTAGTTACAGTCTAAAAGCCACCCTTGGCAGCATGGTTTTGCCTCTGGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTCAAGGTTTTAGCTGACAGTTTGGGCATTCCGTGTCGATTGGTGAAAGGACTGCAGTATATGGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTGGACCTAATGGCAGCTCCTGGAGCACTTATTCCATCTGATGCTACTGCATCACACATTGAATGCGATGGATCTTCCTTTGTGGCCAGTCCTTCATCAAGAGAGGTAGATTCGTCCAATGTAGCATCATTCAGCAGCGGGGTTGGAAGTTCATCTGAAGAAACTTCAGACTGTGGAGGGAAAGAATCTGGTTTGAGTGGGTTTGCTACGGGCAAGGAAGATTTAAAGAAACCATCAAATGAATCCAAAAGTACCCCCTATGCAGAGAAGATCAGAGTGAAGGATTCTTCCGGCAGAACTAACTATCCATACACGCATGGACGATCTCCTTCTTGGACTGAGGGCATCAGTTCCCCTGCAGCACGCAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCTAAGGAGAATCCTAACTTGGCTCAAAAACTTCATGACGTTTTACTTGAGAGTGGTGTTGTTGCACCTCCAAACTTATTTTCTGAAATGTATCATGGGCAGTTAGGTACTTCAACTGGGACCAATTTTCCAACTGAACAGAAAGATGAAAATAAACTACCAAGTGTGCAACAAGAAATTAAGATTGATAACAACCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAAATTCTTCGCAAAGCAACTCCTGGCAGTCATCTGGATTCTAAGCCTGTAGATGGCTTAGGAATTGGTCTTCCCCTTGATACAGGGGAAACTGCTGGACAGAACATACCATCTCAGGCAGAAGCAGCTCGGGTAAAGTACGGGAAAAATGTCCCAGTGGCAGCGGCTGCAGCTGCTGCAGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCAGCGGCAAAATCAAACACTGACTCTAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGTATGAGCAGGACAGTCGAAGTGATGGGGATACAGAGGGTGGTGGTTCTGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATCCTTTAGGAGAAAACTCGGAAGGTGAGAGAAAATCTGACAGATCAGTAAGTAATGATAGCAACAAATCTGATTCTGCACTGGATGAGGTTGCCGAGTATGACATTCCATGGGAGGAAATCAAAATGGGAGAGCGTATTGGACTAGGTATTGGTTGTGCATTGTTCTATGTTAGTCTGCTAGTGTTTAGTGGAGCACTTGGTTGTTGTCCTTGTTCTGTAGAAAAACTCAATTTGCTACTGCGATCATATGGGGAAGTTTACCGTGGTGAATGGCATGGAACTGAAGTTGCCGTAAAAAAGTTCTTATATCAAGATATCTCTGGTGAATTACTTGAAGAGTTCAAAAGTGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTTGATGCTGCCCGAGGAATGAACTATCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCGAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTATTGAGAAATGAGCTTTCAGATGAAAACTATGGTGTCATATTGTGGGAGCTCTCTACATTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCAGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGCCATTGCAGATATTATCAGACAATGCTGGCAGACAGATCCAAAGCTGAGGCCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCACGAGTTGCTGAATTTCCCGCAGGATAG 3282 0.4476 METAPAQLNHLDRLTWKLARPVAWGLLFGFDCLGSGAVSQKRGSLDSFLDTGDHTSSQRDSCLVREQNGENILKKLHIMSNQSDDAQGATSSKSTKSSDGSSSTTPKKLSNWLHSVSNRQSPSPPSPNLARGERMDPSDSVSSGGLDVVSDSARRDSESSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSARMPSLVDLQGRSTSVDVTWEAVLVNRAADSNLLKLEQEAMKMAASSGKDFEVVVNSNLVHKLAIMVADYMGGSVKDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYMGSDDVAMNFVKIDDGREYIVDLMAAPGALIPSDATASHIECDGSSFVASPSSREVDSSNVASFSSGVGSSSEETSDCGGKESGLSGFATGKEDLKKPSNESKSTPYAEKIRVKDSSGRTNYPYTHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEMYHGQLGTSTGTNFPTEQKDENKLPSVQQEIKIDNNLVPARFLPPLPYHKILRKATPGSHLDSKPVDGLGIGLPLDTGETAGQNIPSQAEAARVKYGKNVPVAAAAAAAAAVVASSMVVAAAKSNTDSNLEIPVAAAATATAAAVVATTAAVSKYEQDSRSDGDTEGGGSESKGSGDGEPNPLGENSEGERKSDRSVSNDSNKSDSALDEVAEYDIPWEEIKMGERIGLGIGCALFYVSLLVFSGALGCCPCSVEKLNLLLRSYGEVYRGEWHGTEVAVKKFLYQDISGELLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDENYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRQCWQTDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVAEFPAG 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 1073 1093 - -
Vimu11g04911 1093 ProSiteProfiles Protein kinase domain profile. 786 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04911 1093 CDD STKc_MAP3K-like 828 1065 - -
Vimu11g04911 1093 FunFam Serine/threonine-protein kinase isoform 1 820 896 - -
Vimu11g04911 1093 Gene3D Phosphorylase Kinase; domain 1 826 895 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 497 516 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 439 487 - -
Vimu11g04911 1093 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 1074 - -
Vimu11g04911 1093 SMART serkin_6 819 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04911 1093 FunFam PAS domain-containing protein tyrosine kinase family protein 896 1081 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 1073 1087 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 82 169 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 151 169 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 439 459 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 749 764 - -
Vimu11g04911 1093 Gene3D Transferase(Phosphotransferase) domain 1 897 1076 - -
Vimu11g04911 1093 SUPERFAMILY Protein kinase-like (PK-like) 828 1075 IPR011009 -
Vimu11g04911 1093 Pfam Ethylene-responsive protein kinase Le-CTR1 208 411 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 82 127 - -
Vimu11g04911 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Vimu11g04911 1093 Pfam Protein tyrosine and serine/threonine kinase 828 1065 IPR001245 GO:0004672|GO:0006468
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 718 771 - -
Vimu11g04911 1093 MobiDBLite consensus disorder prediction 498 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04911 Vimu-Chr11 68713849 68721387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04911 53 1085 MAP Kinase Kinase Kinase AT1G73660 60.019 0.0 1095
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu11g04911 PK_Tyr_Ser-Thr 2.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04911 - - gmx:100778331 1567.75