Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04909 ATGGACCCAACTTCCGACACTCCGCCTCCTCCGTCCACCGCCGTCCCCTTCACGGCGGAGCTCAACAACCACGTTTCCACGGATGAAGTTAACTCCATTCCCAACCACCCGCCATATGACGAGATGATATACACAGCTATTGGAGCTCTCAAGGAGAAAAATGGGTCGAGCAAGCGTGCCATAGGAAAGTACATCCAGCAAGTGTACAAGAACCTTCCAACCACTCACTCTGCTCTTCTCACTCACCACCTCAACCGTTTGAGATCAGTTAACCTTCTAGTTATGGTCAAAAAATCCTATAAGCTCCCTGGATCTGATAATACTCCACCGTCTCCTCCCTCTCAAGTTCAAAAGACCCGTGGCAGGCCTCCCAAACTGAAACCCCAGCCCACTGCCGACCCTGTCTGGGCTTCTCTTGGCCTTTCGGATGACCCTACTCCTGCCTCTACTCCTCAATCCGAGAAAAGAGGTCCGGGTCGTCCCAGAAAGATTCTAGGTGTGAGCCCGGGCTCGGCTGTCCCAGCTCGAAGGGGCCGCCCACCGGGCTCCTCTGGGAAATCTAAAGTGTCAAGGAGGGTAGGGCGTCCGCCCAAGCCCAAATCTGTCTCTGGGATCTCCAGTGGACTCAAACGACGGGGCCGTCCGCCTAAAGCCAAATCAAACCTCTCCGTAATTCCCTTTGCAGCTCCCGTTGCTCCTGGTCAGCCCACTGTACAGCCCATCATTCCAGCCCCTTCTTTGCCCAATGGGTCCCCCAGGCCCAGAGGACGTCCCAGAAAGATTGTTCCTGCTGGTGGTGCTCCGCTGCTCACTCTCACTGCTGACGGTGGTGCAGCCCGTGGCCGCGGACGACCACGCGGAGTCTTTTCTGTGGTTAGGGCGGGTCGGCTCCAGAAGCTCGCAGTTGGAAGGGCTAAGAATCCTGCAAGAAGGCCAGTGGGCCGCCCTAAAGGATCAACTGCTGCTGCAATCAGTGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAAACCAAAGTGAAGGAGTCTCTTGGCATGCTTAAACCGTACTTCAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAGCTGGAAGTGCTGTCAACTCTGGATCTTAAGGCATCATTGAGGGATGAGACTCAGCAACAGCCAGAGCCACTGCCGCAGACACAGGTGTATGAACAGCAATATCCCCCACAGGTGCCGCAACAGCCACAGCTGCAGGAATTTTTTCAGACACATACATCAGCTCAAAGCTAG 1281 0.5425 MDPTSDTPPPPSTAVPFTAELNNHVSTDEVNSIPNHPPYDEMIYTAIGALKEKNGSSKRAIGKYIQQVYKNLPTTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDNTPPSPPSQVQKTRGRPPKLKPQPTADPVWASLGLSDDPTPASTPQSEKRGPGRPRKILGVSPGSAVPARRGRPPGSSGKSKVSRRVGRPPKPKSVSGISSGLKRRGRPPKAKSNLSVIPFAAPVAPGQPTVQPIIPAPSLPNGSPRPRGRPRKIVPAGGAPLLTLTADGGAARGRGRPRGVFSVVRAGRLQKLAVGRAKNPARRPVGRPKGSTAAAISAHKAANEDLRKKLEHFQTKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKASLRDETQQQPEPLPQTQVYEQQYPPQVPQQPQLQEFFQTHTSAQS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04909 426 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 279 291 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 310 322 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 252 264 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 209 221 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Vimu11g04909 426 SMART AT_hook_2 174 186 IPR017956 GO:0003677
Vimu11g04909 426 FunFam Histone H1.2 32 112 - -
Vimu11g04909 426 SUPERFAMILY "Winged helix" DNA-binding domain 34 111 IPR036390 -
Vimu11g04909 426 PANTHER HISTONE H1 8 200 - -
Vimu11g04909 426 MobiDBLite consensus disorder prediction 101 284 - -
Vimu11g04909 426 Gene3D - 32 113 IPR036388 -
Vimu11g04909 426 MobiDBLite consensus disorder prediction 236 252 - -
Vimu11g04909 426 Coils Coil 324 344 - -
Vimu11g04909 426 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g04909 426 SMART h15plus2 33 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g04909 426 MobiDBLite consensus disorder prediction 382 411 - -
Vimu11g04909 426 PRINTS AT-hook-like domain signature 250 260 IPR017956 GO:0003677
Vimu11g04909 426 PRINTS AT-hook-like domain signature 117 127 IPR017956 GO:0003677
Vimu11g04909 426 PRINTS AT-hook-like domain signature 207 218 IPR017956 GO:0003677
Vimu11g04909 426 Pfam linker histone H1 and H5 family 36 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g04909 426 CDD H15 34 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04909 Vimu-Chr11 68701603 68704324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04909 21 105 Single Myb Histone (SMH) Gene Family AT1G49950 34.343 1.58e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04909 - - gmx:547676 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04909 11 68701603 68704324 Vimu11g04909 11 68701603 68704324 ECH