Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04907 ATGGGTGGTGGAGGAACGCTCGTGGAAGGGATTCGAAGATTGTTTCAACGACGCGCTTCTAGCTCTGCTGAAAACCAAAACAATGCCAACAATAGCCGCGTCTACGTGAGAGATTTGCGCGCGCAGTTGGCTTCCGTTACCAACCACGACCACCTTGTTGACCCTGATTTCGATTTCTCTACCTTGAAGCCCATCAAAGTTCCCGCACAAATCCCCTTCAGACCCTCTTCTATGGATCATCACAAAAAGGGTGCTCCAGAGTCAGAGTTTTTTACTGAGTATGGAGAGGCGAGTCAATACCAGATCCAAGAGGTTGTTGGAAAAGGAAGTTATGGTGTTGTGGGTTCTGCCGTTGATACTCACACGGGTGAAAGGGTTGCAATCAAGAAAATAAGTGATGTTTTTGAGCATGTATCCGATGCCACACGGATCCTTAGAGAAATTAAGCTCTTGCGGTTGCTTAGACATCCTGATATTGTGGAAATTAAGCATATTATGCTTCCTCCTTCCCGGAGAGAGTTCAGGGATATCTATGTAGTGTTTGAGTTGATGGAATCTGATCTCCATCAAGTAATCAAGGCCAATGATGATCTTACCCCCGAGCACCATCAATTTTTCTTGTACCAACTTCTAAGGGGCCTGAAATATATTCATACAGCAAACGTGTTTCACCGTGATCTGAAGCCAAAAAATATTCTTGCTAACGCTGACTGCAAACTAAAAATATGCGATTTTGGACTTGCTCGAGTTTCATTCAATGATGCTCCATCAGCTATATTCTGGACTGATTATGTTGCAACTCGGTGGTACCGTGCACCGGAATTATGTGGTTCTTTTTTTTCCAAGTACACTCCTGCAATTGATATATGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCTGGAAAAAATGTTGTGCACCAATTAGATCTCATGACTGATTTGCTTGGCACTCCTCCTCCAGAGTCCATTGCGAGGATTCGAAATGAAAAGGCCAAAAGGTATCTCAACAGCATGAGAAAAAAGCAACCAATTCCACTATCCCACAAATTTCCAAATGCAGATCCATTGGCTCTCCGGTTACTGGAACGGCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGGCACTAGCTGATCCTTACTTCATTGGTTTGGCGAACATAGACCGTGAACCATGCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTCAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCTCAAATGCTGCAAGAACATCTTCGTGGTGGAGATCAAACTAGCTTCATGTATCCAAGTGGGGTTGATCGGTTCAAGAGACAGTTTGCACATCTTGAGGAGCATTATGGGAATGGTGAACGAAGCTCTCCATTGCAGAGACAGCATGCCTCCTTACCTAGAGAGAGAGTTTGTGCTCCCAAGGATGAAAGTGAACAACACAACGATGTTGAAAATCCAAGTGGATCAAATCTACAGAGTCCTCCAGGGTCTGATGCGACAGGTTCTCAAAATGGAACCTCCAGATCAAACTACAGTGCGCGTAGCTTGTTAAAAAGTGCGAGTATTAGTGCTTCTAAGTGTGTAGTTGTGAAACAAAATAAAGATCCAGAGCAAGAGGCAATTAAGGAGATAAATGATGAGACGATGGATGATGTGACGGATGTTGCTGCCCTCCACGCTTGA 1749 0.438 MGGGGTLVEGIRRLFQRRASSSAENQNNANNSRVYVRDLRAQLASVTNHDHLVDPDFDFSTLKPIKVPAQIPFRPSSMDHHKKGAPESEFFTEYGEASQYQIQEVVGKGSYGVVGSAVDTHTGERVAIKKISDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKAKRYLNSMRKKQPIPLSHKFPNADPLALRLLERLLAFDPKDRPSAEEALADPYFIGLANIDREPCTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEHLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGNGERSSPLQRQHASLPRERVCAPKDESEQHNDVENPSGSNLQSPPGSDATGSQNGTSRSNYSARSLLKSASISASKCVVVKQNKDPEQEAIKEINDETMDDVTDVAALHA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04907 582 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 99 443 - -
Vimu11g04907 582 FunFam Mitogen-activated protein kinase 186 414 - -
Vimu11g04907 582 CDD STKc_TDY_MAPK 99 436 - -
Vimu11g04907 582 SMART serkin_6 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04907 582 Gene3D Phosphorylase Kinase; domain 1 116 437 - -
Vimu11g04907 582 ProSitePatterns Protein kinases ATP-binding region signature. 106 130 IPR017441 GO:0005524
Vimu11g04907 582 FunFam Mitogen-activated protein kinase 415 437 - -
Vimu11g04907 582 Gene3D Transferase(Phosphotransferase) domain 1 186 414 - -
Vimu11g04907 582 ProSitePatterns MAP kinase signature. 135 238 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu11g04907 582 ProSiteProfiles Protein kinase domain profile. 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04907 582 FunFam Mitogen-activated protein kinase 89 194 - -
Vimu11g04907 582 Pfam Protein kinase domain 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04907 582 MobiDBLite consensus disorder prediction 505 535 - -
Vimu11g04907 582 SUPERFAMILY Protein kinase-like (PK-like) 96 395 IPR011009 -
Vimu11g04907 582 MobiDBLite consensus disorder prediction 489 504 - -
Vimu11g04907 582 MobiDBLite consensus disorder prediction 471 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04907 Vimu-Chr11 68688775 68692704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04907 85 582 MAP Kinase Gene Family AT3G18040 82.806 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu11g04907 Pkinase 3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04907 - - gmx:100780831 1022.31