Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04900 ATGGCCGGAATTTCTAAAAAAGACATCATTGATCGATTTCCATCCAATCTTAATATCCTTGTCATTGATACTGACATCGAAGTTCTTGAATTCATCGAGAAAACATACAAGGGTTCTCATCAAGTTATAATATGCACTGAATCTTCAAGAGCTGTCGATCTTTTACTGAGAAAAGAAATAGACATTCATTTGATTATCATGGAACTTCATATGCCAATGATGGATGGCTATGAATTCCTGGAATTTCTCAATAAAGAAGAAATGGATGTTCCTCTCATCATCATGTCTGAGAAGAAGGAGGCTTTTCAGGATACTAAGCTTTGCATAATGAAGGCTATTGAACTTGGAGCTTGCTATAATTGGGTTAAACCCTTGACTGAGGGTTACCTACGTACCTTTTGGGTACCTATGTTGCGGCATTACGAAAACTGGCACATAAGGAAAAATATTGAAAGAAGTGAGACAAGTTATGGTTCTGAATTCTCTTCTCATAGAGAAGCCGATGATGATTAA 513 0.3665 MAGISKKDIIDRFPSNLNILVIDTDIEVLEFIEKTYKGSHQVIICTESSRAVDLLLRKEIDIHLIIMELHMPMMDGYEFLEFLNKEEMDVPLIIMSEKKEAFQDTKLCIMKAIELGACYNWVKPLTEGYLRTFWVPMLRHYENWHIRKNIERSETSYGSEFSSHREADDD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04900 170 SMART REC_2 17 134 IPR001789 GO:0000160
Vimu11g04900 170 SUPERFAMILY CheY-like 15 142 IPR011006 -
Vimu11g04900 170 ProSiteProfiles Response regulatory domain profile. 18 138 IPR001789 GO:0000160
Vimu11g04900 170 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 151 IPR045279 GO:0009736
Vimu11g04900 170 Gene3D - 16 157 - -
Vimu11g04900 170 Pfam Response regulator receiver domain 19 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04900 Vimu-Chr11 68657063 68657790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04900 11 170 Response Regulator Gene Family AT4G16110 30.303 1.47e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04900 Response_reg 1.5e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04900 - - vra:106768288 193.741