Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04894 ATGATAGATATTGAGGAGGATATCCGTTCTTTACAGCTTGAATCAGCAGAAGACAATAACGGGGTGGTAAATCCAGAGGATGGAAGGCCGGAAGAGGTCGAGAAATCTGATAAGATGGATGAAGATCCCAAGCAAGAGGTTGAAGCACAGTCTGTTGAGCCTGAGCCAAAAGTGAAAGATAAGGAGGTTCATCCTGTTCAAGAAGAAGAAGAGGAGCCAGAGACAACTAAAAGGCACTTGAATGTGGTGTTTATTGGCCATGTGGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGGACTATTCAAAAATACGAGAAAGAGGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACTGAGACAACAAGGTTTACTATTTTGGATGCACCTGGCCACAAAAGCTATGTTCCTAATATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTTTTGGTTATATCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTGCTTGTTGTTGTTAATAAAATGGACGAACCTACAGTGCAGTGGTCAAAAGAAAGGTATGAAGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGGTACAATGTCAAGAAAGATGTCTTGTTTTTGCCAATATCTGGTCTAGCGGGTTCAAACATGAACACAAGGGTGGACAAAAGTGTTTGCCCATGGTGGAATGGGCCTTGCTTGTTTGAGGCCCTTGATGCTATCGAAGTTCCACCGCGAGATCCCAAAGGTCCTTTCAGGTATTGCATTTCTGACCATCTTGCCCCCAGGATGCCCATTATTGACAAATTTAAGGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTTCTGTTCGCGAGGGAGATTCTTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCCATATTCATTGATGAGGACCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATAGTAACTGGATTTGTCCTGTCTAGTGTTGCTAATCCAATACCAGCAGTTAATGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTTCTACAGCAAATTGATACAAAGACAAGGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTGAAGAATGGCGCTGTTGTAGTGTGCCGTGTTCAGGTGCATTTTTTGGCATTACGAATTTAG 1458 0.4239 MIDIEEDIRSLQLESAEDNNGVVNPEDGRPEEVEKSDKMDEDPKQEVEAQSVEPEPKVKDKEVHPVQEEEEEPETTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYEEIESKMVPFLKQSGYNVKKDVLFLPISGLAGSNMNTRVDKSVCPWWNGPCLFEALDAIEVPPRDPKGPFRYCISDHLAPRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDIVTGFVLSSVANPIPAVNEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTRKPLKKKVLFVKNGAVVVCRVQVHFLALRI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04894 485 PANTHER TRANSLATION FACTOR 69 478 - -
Vimu11g04894 485 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 57 301 - -
Vimu11g04894 485 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 303 IPR000795 GO:0003924|GO:0005525
Vimu11g04894 485 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 406 475 IPR009001 -
Vimu11g04894 485 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 316 401 - -
Vimu11g04894 485 Pfam Elongation factor Tu GTP binding domain 77 282 IPR000795 GO:0003924|GO:0005525
Vimu11g04894 485 MobiDBLite consensus disorder prediction 1 78 - -
Vimu11g04894 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 310 IPR027417 -
Vimu11g04894 485 CDD eRF3_II 320 399 - -
Vimu11g04894 485 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Vimu11g04894 485 SUPERFAMILY Translation proteins 319 403 IPR009000 -
Vimu11g04894 485 Gene3D Translation factors 403 481 - -
Vimu11g04894 485 MobiDBLite consensus disorder prediction 24 78 - -
Vimu11g04894 485 Pfam Elongation factor Tu C-terminal domain 404 478 IPR004160 -
Vimu11g04894 485 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Vimu11g04894 485 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Vimu11g04894 485 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Vimu11g04894 485 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Vimu11g04894 485 Pfam Elongation factor Tu domain 2 331 397 IPR004161 GO:0005525
Vimu11g04894 485 Gene3D Translation factors 316 401 - -
Vimu11g04894 485 CDD EF1_alpha 81 302 - -
Vimu11g04894 485 Gene3D - 58 301 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04894 Vimu-Chr11 68611423 68617839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04894 77 469 Eukaryotic Initiation Factors Gene Family AT5G60390 37.056 1.14e-83 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04894 K03267 - gmx:100793653 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04894 11 68611423 68617839 Vimu11g04894 11 68611423 68617839 ECH