Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04875 ATGCCTGTAGTCACAAACAGAGCAACACCTACAGTGGCAGAGCACATCAAATGGAGAAGACCCAGAAACCAATTCAACCATCATCACCATCACCCCATTCCAGAATCAGATCCAAACCCTCAAATCCCTTCCATTATCCAATCAACTAGGGGCAAGTCCACCATATCCTCCCTGCTCCTCTCCACTTTCTCCAACAATACTTCCTCCGCCAATATTGACACCCCCACCATCAATGCCACTGCCCAAAGCAAGAAAAAAACCAACTTTTCCGCAGCAACCTTCAGAGGGTTGGGGTGCACCGCCGGCGCGTCACAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGAACCACCAGCGGCGGCAAGAACAAGACTTTCCATGGCGGGATTCTGGAAGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGCATTGGGTTCTCAGCAGATACTGCTGCCTCCGTTGATTGTGTTGTGGCCCGGAAGAATGTATCTGCCAGAGGGAAAATTGATGTGGATAAGATTACTCACAGGGAGGTATTCTCATTTCCGCAATGGCTGATCTTTTTTTCACGATCATCGTATGTGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACATTTTCACGCCACGCTCTGCCTCGGACTCTTATGGAGCTGCGACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACACGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGGCCAGACTTCAATTTTGGAATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGAGTTTTGAGAACCTTGGACAGTTGAATGTTACGTTGCATTACATTATTCACCATCAAGAAGGACAAGGGCATCATGAAAACTCAAACACTTTTCTTAGTGACAAGGATGTCTCCCATGTGAACCACCAAAAGTAG 1164 0.4648 MPVVTNRATPTVAEHIKWRRPRNQFNHHHHHPIPESDPNPQIPSIIQSTRGKSTISSLLLSTFSNNTSSANIDTPTINATAQSKKKTNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTTSGGKNKTFHGGILEGSNPGCVDFQDVWCGPGIGFSADTAASVDCVVARKNVSARGKIDVDKITHREVFSFPQWLIFFSRSSYVGRRTETFTFLDTDSDIFTPRSASDSYGAATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWNDTSKHQIDKECSICQSFENLGQLNVTLHYIIHHQEGQGHHENSNTFLSDKDVSHVNHQK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04875 387 MobiDBLite consensus disorder prediction 21 44 - -
Vimu11g04875 387 MobiDBLite consensus disorder prediction 121 136 - -
Vimu11g04875 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 21 347 IPR045191 GO:0061630
Vimu11g04875 387 MobiDBLite consensus disorder prediction 117 143 - -
Vimu11g04875 387 MobiDBLite consensus disorder prediction 366 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04875 Vimu-Chr11 68494347 68498235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04875 12 294 C3H Transcription Factor Family AT1G73760 39.604 5.87e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04875 - - vum:124831997 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01580 8 21707044 21711633 Vimu11g04875 11 68494347 68498235 ECH
Vimu11g04875 11 68494347 68498235 Vimu11g04875 11 68494347 68498235 ECH