Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04865 ATGCAAAACGGTAACCTCCACGACACGCTTTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACCTGCTTCTCAATCATTCTCAATATAGCCAAAGGAATTCACTTTCTCCACTCCTGTTACCCCCCTGTTATCCACGACGACATAAAGTCGAGTAATGTTTTGCTTAATAGGGATTTCTCTTCCAGAATTGGCGACTTCGGGTTAGCGAGGTTGAGCTCGGAGCCTCTGAGGTTTGAAATTGAGGTCCTGGAATGTGGTCGTGTTAATAATGATGAAGAGAAGCGGAAGGTGAAGGAGGAGGAGGTTGAGGATTTTGGATCGGTGAGTACTCACAATATTTTTATGGAAGAAGGTAGCTTGGGGGTGGAGCAATCTCCTTCGCTAGAGATTGTGGCGATGATGGCGATGACTTCGCCAGAGACGGGTTTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGACGATGCGAATAAGATGAACGGGGAACGTTCCTTTAAAGAGATTCTTTTATACATTATGTCAAAAGTAACAAATTAG 546 0.4725 MQNGNLHDTLLHRKCPELSNWNTCFSIILNIAKGIHFLHSCYPPVIHDDIKSSNVLLNRDFSSRIGDFGLARLSSEPLRFEIEVLECGRVNNDEEKRKVKEEEVEDFGSVSTHNIFMEEGSLGVEQSPSLEIVAMMAMTSPETGLAVAGASPGFEKDDANKMNGERSFKEILLYIMSKVTN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04865 181 SUPERFAMILY Protein kinase-like (PK-like) 1 78 IPR011009 -
Vimu11g04865 181 PANTHER OS07G0586332 PROTEIN 1 150 IPR044576 -
Vimu11g04865 181 Pfam Protein kinase domain 2 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04865 181 Gene3D Transferase(Phosphotransferase) domain 1 1 100 - -
Vimu11g04865 181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Vimu11g04865 181 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04865 Vimu-Chr11 68417918 68418463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04865 1 76 Receptor kinase-like Gene Family AT1G72180 46.250 5.26e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vimu11g04865 Pkinase 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04865 - - gsj:114390604 219.164