Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04864 ATGGCTCAAACACCTCCGGCATTAGAGCAGGTCCAGTGCTTCGGCCGAAAGAAGACGGCGGTGGCAGTCACATACTGCAAGCGCGGCCGCGGACTTATCAAGATCAATGGATGTCCTATTGAGCTTGTCGAGCCGGAGATCCTCCGCTTCAAGGCTTTTGAGCCTATCCTCCTCCTCGGCCGCCACCGTTTCGCCGGTGTTGACATGCGCATCCGTGTTAAGGGCGGTGGACATACCTCCCAGATCTATGCCATCCGTCAGAGCATCGCCAAGGCTCTGGTCGCTTACTACCAGAAGTACGTGGATGAGCAGTCCAAGAAGGAGATCAAAGACATCCTCGTCAGGTACGATCGCACACTCCTCGTTGCCGATCCTCGCCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGCGCCAGTGAGAGAAACCAAACCCTAATTGCAAACATGGCTCAAACACCTCCGGCATTAGAGCAGGTCCAGTGCTTCGGCCGAAAGAAGACGGCGGTGGCAGTCACATACTGCAAGCGCGGCCGAGGACTTATCAAGATCAACGGATGTCCTATTGAGCTTGTCGAGCCGGAGATCCTCCGTTTCAAGGCTTTTGAGCCTATCCTCCTCCTCGGCCGCCACCGTTTCGCCGGTGTTGACATGCGCATCCGTGTTAAGGGCGGTGGACATACCTCCCAGATCTACGCCATTCGCCAGAGCATCGCCAAGGCTTTGGTCGCCTACTACCAGAAGTACGTCGATGAGCAGTCCAAGAAGGAGATCAAAGACATCCTCGTCAGGTACGACCGCACACTCCTCGTTGCCGATCCTCGCCGCTGTGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGCGCAAGGTTCCAGAAATCCTACCGTTGA 894 0.5705 MAQTPPALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARASERNQTLIANMAQTPPALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04864 297 FunFam 40S ribosomal protein S16 4 146 - -
Vimu11g04864 297 Gene3D - 4 145 IPR014721 -
Vimu11g04864 297 Gene3D - 153 297 IPR014721 -
Vimu11g04864 297 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 297 IPR020568 -
Vimu11g04864 297 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 141 IPR020568 -
Vimu11g04864 297 Pfam Ribosomal protein S9/S16 15 142 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vimu11g04864 297 Pfam Ribosomal protein S9/S16 165 297 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vimu11g04864 297 ProSitePatterns Ribosomal protein S9 signature. 75 93 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vimu11g04864 297 FunFam 40S ribosomal protein S16 154 297 - -
Vimu11g04864 297 ProSitePatterns Ribosomal protein S9 signature. 225 243 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vimu11g04864 297 PANTHER RIBOSOMAL PROTEIN S9 157 294 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04864 154 297 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.583 6.48e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04864 K02960 - qsu:111991747 288.115