Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04856 GGATCAGATGCAATTCAGTGTATCTCACTATATTTGGTGGAACAAGAAGTTATAGTAGATGGACAAGCTTTCCAAAAGATGGATAATCTTAAGATGCTTATATTCGATGGATATTTTGGTTTTGGGCTCGAATCCAACGTGTTTCTTGCATCATCTCTTGTAACTCTACCAGACACTTTAAAGATTCTTTATTGGAAAGGTTTCCCTCAAAGATCTTTACCACTGAACTTTTGCCCAGAAAATCTAGTGAGACTCGAAATGCCAGACTGCCATCTTGAACAACTTTGGGAAGAAGATCAGGTTTTTCAAAGTTTACCCAAGTTGAAAAGGCTAAACCTGAGTTCTTCTCATAAACTTAAAAGAATACAAGACCTTTCCCTGTCACCAAATATTGAAGAAATAATTCTCAGCGGCTGTGTAAAATTGAAGGAAGTTTACTCTTCCACATTCCTTAGCGAGCTCAGTTGTTTATGTTTAGAATTTTGTTGGGATTTGAGGAGTGTAAATATTCCCAGCAATATTCTATCCAGATCACCAGGATGCATTCTTTTTACCAATTGTGACAACCTTGAAATGTTTTCAACCGGTCAAACCCAAATATGTTATTCTCCACCATCGTTATCATTAATCGCTCCAATATTCCCTCATGTCAAACTGGCGCGTCAATTGCAACGTGGACATTCCATAGAGGAGCACTCGTCTACAAGTGAAAATCCCTCAGGATCCTATTACAGTAGAATTTTCTCCATTACTTTTGACCGATATTGGGAAGCAGATGAAGAAAATGAAGTGACTAATAATAATATATACGCATATGATGAAATGACGATACAATTCACTGGAGAGGAGCCCTTAAACTTTCTAATTTTCAAGGAGCTCTGTTTCATAGATCTCTCAAACTGTTCTTCCCTTACAATATTTCCATTTAACCTTTCTGAGATGAAATTCCTAAAGAAACTTTGTCTGGGTGGTTGCTCAAAATTGCAAAATTTCCCCGAGATTGAGGATACGATGGAAGACCTAGAGGTGCTCATCTTGGAAAGAACAGCCATAGAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAAGAATTGAGTTTGAGCGGTTGCTGGAATCTTGAGATTATTCCATCTTCCATTGGAAGCCTCACCAGACTACGTAAGTTAGACCTTACCTACTGTGAATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTAAGGCTGAGGACCTTCCCAGAGATCACGGAGCAGGCACAGACTTTTTCTCACATAAACTTAACAGAAACTGCTATCAAAGATCTGCCTTCCTCATTTGGTAATTTGGTTAATCTTCGATCCCTACAGCTCAACAAATGCATGGATCTCGAATCACTCCCAAACTCTATTGTTAATCTCAAGCTTCTCTTTAAACTTGATTGTTCGGGGTGTGCCAAATTAACAGAAATCCCAGCACACATTGATTGCCTGTGGTCATTAATGGAACTGTCACTGAGTGAGAGCGGAATCGTGAACCTTCCTGAAAGCATTGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGGCTGCAAAAATCTTGAATGCATCCCACAGATTCCACCGTTTCTAAAACAACTGGTGGCATTGGATTGCACATCAATTAGAAGAGTAATGTCAAATGGAAACCGCTTATATTCGGCGGAGGGTGTCTTCAAATTTCATTTGACCAATGCCCAACGACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCGACGATGCATATAAGTCTGTGTTCTTCTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGCAGCGAAGGAAGCTCAGTAACTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTGATTGGTTTCGCTTTGTGTGTGGTTTTTGGATTGTTAGATGCGAATGATATTAATGGTAGACATGGTTCTTTTAGTTACAGCCTAAAATTGGAATATGATAATAATGATACGCAGATTATTTCAAACAATGATGTGCTAATCAACTATTTCAATTGGAATGGTAAAGAGAGAGTTGTCAATCAAGATCACACATTCATGTGGAAATTTGACTTGGAGTCCTTAAGGACGAGTGGCATGAACCTTGGGCTCTGTGATGCTCGAAGCTTCAATTTTGAGATTAGTCCGTTGGATTCTCGAGATTACAGATTAAGAAATGGCCTACTCTCTCGCTCTTCTGGTAATTGGTCTTCTGTTGGTGAGTGTGGCTTATTACCAGGGTCAGATGCAATACAATGTATATTACTAGATGAGAATGAAATGGAAGAAGTTGAAGTACATCCAAACACTTTCGAGATGATGAACAATCTTAGGATGCTTATGATCTTTCCTTATTGTTGGGGTCAAATCATATCACACGTGGTGGTTCGTGAATCATTTCTTGTAAGTTTGCCAGACACTTTGAAGATTCTTTGTTGGAATAATTTCCCTCAAAGATCTTTGCCATCAAATCTTTGCCTACAAAATCTGGTGAGACTTGAAATGCCAAACTGCCGTCTTGAACAACTTTGGGAAAGAGATCAGAATTTACCCAAATTGAAAAGGCTCAACCTGAGTAATTCTCGAAAACTTACTAGAATACCAGACCTTTCTCTTTCACCAAATATTAAAGAAATAATTCTGAGTTATTGTGAAAGGTTGATTCAAGTTCACTCTTCCAGATTCCTCAGCAAGCTCAGTTGTTTATTGTTAAATGGTTGTTATGGTCTGAAGAGTGTAACAATTCCCAGCAATATTCTAACCAGATCACCAGGATTCATTCTACTTTCCGATTGTCACCAGCTTGAAATGTTTCAAACCTGTGAAATTCAATCGCGGCCTTTTTCATTATTATCATCAATCTGGGAACGTCCCAGCTATAGATTTGGTGATTCTATGCCTTTCACAAGACTCGATCCCAGTGAAATCTTCTCAATTACCTTTGATAGATACGAGGAGGAAGAAAAAGAAGTGATTAATAATCATATATACTTACAATGTGATGAAGTGCTGACAAAACTAAGAAAAGGTGTACCCTTAAACTTTCAAAGTCTGAAGAAATTCTGTTTCTTAGATGTGTCTAACTGTTCTTCCCTTTCAACCTTTCCATGTGACCTTTCTGAGACGAAATTCCTGAAGCAACTTTGTCTCCGTGGTTGCTCAAAATTGGAAAATTTCCCCGAAATTGAGGACACGGTGGAAGGTCTAGCGGTTCTCATCTTAGACGGCACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTGAACAACTGAGTTTGCGAGGTTGCAAGAATCTTGAGATTATTCCATCTTCCATTGGAAGCCTCACCAGACTATGCAAGTTAGACCTTACCTCCTGTCAATCACTTCAAACTTTTCCAAACACCATTTTCAAATTGAAGTTGAGGATACTTGATTTCTGTGGGTGTTTAAGGTTGAGCACCTTCCCAGAGATCACGGAGCAGGCACAAACTTTTTCTCACATCAACTTAAAAGAAACCGCTATCAAAGAACTGCCTTCCTCATTTGGCAATTTGGTTAATCTTCGATCCCTCCTGCTCAACAAATGCACTGATCTCGAATCACTCCCAAACTCCATTGTTAATCTAAAGTGTCTCCGTAAACTTGATTGTTCGGGTTGTGCCAAATTAACAGAAATACCAACACACATTGGTCGCTTGTCTTCATTAATGGAAATGTCACTGAGAAAGAGTGGAATCGTGAACCTTCCCGAGAGTATGGCTCATCTTTCAAGCTTGAAATCGCTTGATTTAAGCGATTGCAAAAAGCTTGAATGCATCCCACCTATTCCACCATTTCTAAAACAACTCGTAGCATTGGATTGCCCATCCATTAGAAGAGTGATACCAAATTCTCTAGTTCGAAACCTCTCAGAATCGAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAAGATGACCGACGATGCATATAGGTGTGTATTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCTTTTCGTGGTAATGGACCTTCATTAAGTATAAATGAAGATTTAAGTTTCTGTAGCGATGACAGGCTCATTGGTTTCGCTTTGTGTGTTGTTTTTGAACTGTTAGATACGAATGATATTGAAGGTAGATACGGTTCTTTTAGTTACAGCCTAAAATTTGAATGTGATGATGATGGTACACAGATTATTCCAAATAATGATGTGCTAAACAACTATTTTAAATGGATTCATAAAGACAGACGTCTTGATCAAAATCACACATTCGTGTGGAAATTTAACTTGGAGCCCCTAAGGACGAGAGGCATGAACCTTAGGCTCTGTGATGCTACCAGCTTCACTTTTGAGATCAGTCCGTATGATTATGACTTTCAGTGGCCAAATTACGACTCAGTTGTGAACGAGTTAAAATCAGTTGTCAAAATAAAAGAATGCGGCATGTGCCCTCTTTATAGCAGCGGAAGCAATGTTGCATAG 4623 0.3958 GSDAIQCISLYLVEQEVIVDGQAFQKMDNLKMLIFDGYFGFGLESNVFLASSLVTLPDTLKILYWKGFPQRSLPLNFCPENLVRLEMPDCHLEQLWEEDQVFQSLPKLKRLNLSSSHKLKRIQDLSLSPNIEEIILSGCVKLKEVYSSTFLSELSCLCLEFCWDLRSVNIPSNILSRSPGCILFTNCDNLEMFSTGQTQICYSPPSLSLIAPIFPHVKLARQLQRGHSIEEHSSTSENPSGSYYSRIFSITFDRYWEADEENEVTNNNIYAYDEMTIQFTGEEPLNFLIFKELCFIDLSNCSSLTIFPFNLSEMKFLKKLCLGGCSKLQNFPEIEDTMEDLEVLILERTAIEALPSSLWRLVGLQELSLSGCWNLEIIPSSIGSLTRLRKLDLTYCESLQTFPSTIFKLKLRKLDLCGCLRLRTFPEITEQAQTFSHINLTETAIKDLPSSFGNLVNLRSLQLNKCMDLESLPNSIVNLKLLFKLDCSGCAKLTEIPAHIDCLWSLMELSLSESGIVNLPESIAHLSSLKSLDLSGCKNLECIPQIPPFLKQLVALDCTSIRRVMSNGNRLYSAEGVFKFHLTNAQRLDSGARANIEEDARLRMTDDAYKSVFFCFPGSAVPHWFPFRSEGSSVTINEDLSFCSDDRLIGFALCVVFGLLDANDINGRHGSFSYSLKLEYDNNDTQIISNNDVLINYFNWNGKERVVNQDHTFMWKFDLESLRTSGMNLGLCDARSFNFEISPLDSRDYRLRNGLLSRSSGNWSSVGECGLLPGSDAIQCILLDENEMEEVEVHPNTFEMMNNLRMLMIFPYCWGQIISHVVVRESFLVSLPDTLKILCWNNFPQRSLPSNLCLQNLVRLEMPNCRLEQLWERDQNLPKLKRLNLSNSRKLTRIPDLSLSPNIKEIILSYCERLIQVHSSRFLSKLSCLLLNGCYGLKSVTIPSNILTRSPGFILLSDCHQLEMFQTCEIQSRPFSLLSSIWERPSYRFGDSMPFTRLDPSEIFSITFDRYEEEEKEVINNHIYLQCDEVLTKLRKGVPLNFQSLKKFCFLDVSNCSSLSTFPCDLSETKFLKQLCLRGCSKLENFPEIEDTVEGLAVLILDGTAIQALPSSLWRLVGLEQLSLRGCKNLEIIPSSIGSLTRLCKLDLTSCQSLQTFPNTIFKLKLRILDFCGCLRLSTFPEITEQAQTFSHINLKETAIKELPSSFGNLVNLRSLLLNKCTDLESLPNSIVNLKCLRKLDCSGCAKLTEIPTHIGRLSSLMEMSLRKSGIVNLPESMAHLSSLKSLDLSDCKKLECIPPIPPFLKQLVALDCPSIRRVIPNSLVRNLSESKEGVFKFHFTNAQQLDSGARANIEEDARLKMTDDAYRCVFFCFPGTAVPHWFPFRGNGPSLSINEDLSFCSDDRLIGFALCVVFELLDTNDIEGRYGSFSYSLKFECDDDGTQIIPNNDVLNNYFKWIHKDRRLDQNHTFVWKFNLEPLRTRGMNLRLCDATSFTFEISPYDYDFQWPNYDSVVNELKSVVKIKECGMCPLYSSGSNVA 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04856 1540 Gene3D Ribonuclease Inhibitor 8 213 IPR032675 -
Vimu11g04856 1540 SUPERFAMILY L domain-like 19 205 - -
Vimu11g04856 1540 Gene3D Ribonuclease Inhibitor 268 601 IPR032675 -
Vimu11g04856 1540 SMART LRR_typ_2 1093 1116 IPR003591 -
Vimu11g04856 1540 SMART LRR_typ_2 877 901 IPR003591 -
Vimu11g04856 1540 SMART LRR_typ_2 385 409 IPR003591 -
Vimu11g04856 1540 SMART LRR_typ_2 338 361 IPR003591 -
Vimu11g04856 1540 SMART LRR_typ_2 455 479 IPR003591 -
Vimu11g04856 1540 SMART LRR_typ_2 1140 1164 IPR003591 -
Vimu11g04856 1540 SUPERFAMILY L domain-like 1020 1315 - -
Vimu11g04856 1540 Gene3D Ribonuclease Inhibitor 1187 1313 IPR032675 -
Vimu11g04856 1540 SUPERFAMILY L domain-like 783 961 - -
Vimu11g04856 1540 SUPERFAMILY L domain-like 277 582 - -
Vimu11g04856 1540 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 1165 1263 - -
Vimu11g04856 1540 Gene3D Ribonuclease Inhibitor 775 975 IPR032675 -
Vimu11g04856 1540 Gene3D Ribonuclease Inhibitor 1022 1186 IPR032675 -
Vimu11g04856 1540 Pfam C-JID domain 616 722 IPR045344 -
Vimu11g04856 1540 Pfam C-JID domain 1374 1535 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04856 Vimu-Chr11 68348083 68366862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04856 384 557 WRKY Transcription Factor Family AT4G12020 32.386 3.60e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04856 - - var:108320101 1084.32