Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04854 ATGCATTTTGAGTCATCAGATATTCGGATCATAGGAATTTGTGGCATGGGAGGAATAGGAAAAACTACAATTTCTGAACAAATATATCACACATTTGCAATGCAATTTGATTTCAGAAGTCTTGTTTTAAACACTCAAGAAAAAATAAAAAAAAATGGAATAGACAGTGTCAGAGAAAAATATATTTCCGAGCTTCTAAATGAAGTACCATCCCTCAAACGAAGGAGGATTCTCATCATTCTTGATGATGTCACCGATTCAGTTCAATTTAAACAATTATCAAGAAGGTGTGATAGTTTGGGACAAGGCAGTAGAATCATTATAACCAGTAGAGACAGACAAGTGTTAAAGAATGTTGGAGCTGATGACATCTACGATGTTAAGGAGTTGAATGATCTTGATTCTCTAAAACTTTTTAGTTTACATGCTTTTAAACAAAACTCTTCACAAGAAATAACGTACAAGGACTTGACAGAAAAGGTGTTGAGATATGCAAAAGGAATTCCATTAGTTCTCCAAACTTTGGGTTCATTACTTTATGGTAGAACAAGAGAAGCATGGGAAAGTCAATTACAAAAGTTGGAAAAATGCCAACATCTTGAAATTTTTAATGTATTGAAATTAAGTTATGATGGGCTTGACAAGGAGGAGAAGAATATATTTCTTGACATCGCTTGCTTTTACAGGGGAGACGAGGAAAGTGAGGTAGTAGAAAGACTAGATGAATGTGGTTTTTCTTCTAAGATTGGAATGGATGTTCTCAAAGACAGATGTCTAATATCTATCTTTGGTGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTGAATATCCTGGAAAACGCAGTCGATTGTTCAAGGATGAGGAAATTCATGAGGTTTTAAAAAAGAACAAGCCTCAAAGCAAATCCAGAGTGTTTCTTGCATCGTCTCTTGTAACTCTACCAGACACTTTAAAGATTCTTTATTGGAAAGGTTTCCCTCAAAGATCTTTACCACCGAACTTTTGCCCAGAAAATCTAGTGAGACTCGAAATGCCACATTGTCATCTTGAACAACTTTGGGAAGAAGATCAGAGTTTACCCAAGTTGAAAAGGCTCGACCTGAGTTGGTCTTCGAAACTTACTAGAATACAAGACCTTTCCATGTCACCAAATATTGAAGAAATAATTCTCAATTATTGTCGAAAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCAGTTATTTATCTTTAGACGAATGTGATAATCTCAAAAGTGTAAAAATTCCCAGTAATATTCTAACCAGATCACCAGGATTGATTCTTATTACCTCTTGTGTCAAGCTTGAAATGTTTTCAACCACTCAAACCCAAATATATTATTCTCCACCACCATCATCATCATTAATCGGTCCTCATGTCAAACTGCGGCGTCATCGTCGAAATTCCTTTAACGTGCTCCAGTCTTTTGCTAGCCTTCCCTCGAGATTCTATTCCAATGAAATTTTCTCCATTACTTTTGACCGATATTGGGGAACACTAGATGAAGAAAAAGAAGTAACTAATAATAATATATCCGTATATGATGAAATGCCGATACAACTCACTAGAGGTGTGCCCTTAAGCTTTAGTCTCAAGAAGCTCTGTTTAATAGATCTCTCGCGCTGTTCTTCCCTCACAATATTTCCATTTGTCCTTTCTGAGATGAAATTCCTAAAGAAACTTTTTCTCAGTGGTTGCTCAAAATTGGAAAATTTCCCCGAGATTGAGGACACGATGGAAAATTTAGCGATTCTAAACTTAAACAACACAAGCATAAAGGCACTCCCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAAGAACTGAGTTTGTACGGTTGCAGGAATCTCGAGATTATTCCATCTTCCATTGGAAGGCTCATCAGACTATGCAAGTTAGTCCTTGCCTACTGTGAATCACTTCAAACTTTTCCAAACACCATTTTCAAATTGAAGTTGAGGAATCTTGATTTGTGTGGTTGCTTTAAGTTGAGGACATTCCCAGAGATCACCGAGCAGGCACAAACTTTTTCTTACATTGACTTATCAGAAACTGCTATCAAAGAACTGCCTTCCTCATTTGGCAATTTGGTTAGTCTTCGATCCCTGCGGCTCAACAAATGCAGGAATCTCGAATCACTCACAAACTCCATTGCTAATCTAAAGCATCTCAGTAAACTTGATTGTTCGGGGTGTCACAAATTAACAGAAATCCCAAGACACATAGGTCGGTTGACGTCATTAATGGAACTGTTACTGAATGAGAGCGGAATCGTGAACCTTCCTGAGAGCATTGCTCATCTTTCGAGCTTGAAATCGCTTGATTTGAGCGATTGCAAAAGGCTTGAGTGCATCCCACAGATTCCATCATGTCTAAAACAACTGGTGGCATTGGATTGCCCATCCATTAGACAAGTGATGTCAAATCGAAACCTCTCAGGGTGGAAGGAGGGTGTGTTCAAATTTCATTTCACCAAGGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCGACGATGCATATACGTCTGTGTTCTTCTGTTATCCAGGGACTGCAGTTCCTCATTGGTTCCCCTTTCGTGGGAAGGGATTCTCTGTGACTATGAATGAAGATTTAAGTTTCTGCAGTGATGACAGGCTCATTGGTTTCGCTTTGTGTGTGGTTTTTGGATTGTTTGATAGCAATGATATTAATGGTAGACGTGGTTCTTTTACATACCGCCTAAAATTTGAATGTGATGACTATGGCACACAGATTATTCCAAATAATGATCTGTTTCAGAACTATTTCAAATGGAATGGTAAAAACAGATTTGTCAATCAAGATCACACATTCATGTGGAAATTTAACTTGGAGAGTCTAAGGAGGAGCTGCATGAACCTTAGGCTCTGTGATGCTTGCAGCTTCACTTTTGAGATCATTCGATATTACGGAGAAATGGTGAGAGAGTCCCGATCAGTTGTGACAATAAAAGAATGCGGCTTATGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAATGGAAACAAAGGAAGATAGGAAGAGGAAGGCAGAAAGCTACTTAGTAGGGTAG 3171 0.3851 MHFESSDIRIIGICGMGGIGKTTISEQIYHTFAMQFDFRSLVLNTQEKIKKNGIDSVREKYISELLNEVPSLKRRRILIILDDVTDSVQFKQLSRRCDSLGQGSRIIITSRDRQVLKNVGADDIYDVKELNDLDSLKLFSLHAFKQNSSQEITYKDLTEKVLRYAKGIPLVLQTLGSLLYGRTREAWESQLQKLEKCQHLEIFNVLKLSYDGLDKEEKNIFLDIACFYRGDEESEVVERLDECGFSSKIGMDVLKDRCLISIFGGRIVMHDLIQEMGQEIVRKECPEYPGKRSRLFKDEEIHEVLKKNKPQSKSRVFLASSLVTLPDTLKILYWKGFPQRSLPPNFCPENLVRLEMPHCHLEQLWEEDQSLPKLKRLDLSWSSKLTRIQDLSMSPNIEEIILNYCRKLIKVHSSILLTKLSYLSLDECDNLKSVKIPSNILTRSPGLILITSCVKLEMFSTTQTQIYYSPPPSSSLIGPHVKLRRHRRNSFNVLQSFASLPSRFYSNEIFSITFDRYWGTLDEEKEVTNNNISVYDEMPIQLTRGVPLSFSLKKLCLIDLSRCSSLTIFPFVLSEMKFLKKLFLSGCSKLENFPEIEDTMENLAILNLNNTSIKALPSSLWRLVGLQELSLYGCRNLEIIPSSIGRLIRLCKLVLAYCESLQTFPNTIFKLKLRNLDLCGCFKLRTFPEITEQAQTFSYIDLSETAIKELPSSFGNLVSLRSLRLNKCRNLESLTNSIANLKHLSKLDCSGCHKLTEIPRHIGRLTSLMELLLNESGIVNLPESIAHLSSLKSLDLSDCKRLECIPQIPSCLKQLVALDCPSIRQVMSNRNLSGWKEGVFKFHFTKAQQLDSGARANIEEDARLRMTDDAYTSVFFCYPGTAVPHWFPFRGKGFSVTMNEDLSFCSDDRLIGFALCVVFGLFDSNDINGRRGSFTYRLKFECDDYGTQIIPNNDLFQNYFKWNGKNRFVNQDHTFMWKFNLESLRRSCMNLRLCDACSFTFEIIRYYGEMVRESRSVVTIKECGLCPLYRSGSNVGESSMETKEDRKRKAESYLVG 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04854 1056 PRINTS Disease resistance protein signature 165 179 - -
Vimu11g04854 1056 PRINTS Disease resistance protein signature 71 85 - -
Vimu11g04854 1056 PRINTS Disease resistance protein signature 10 25 - -
Vimu11g04854 1056 PRINTS Disease resistance protein signature 786 802 - -
Vimu11g04854 1056 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 673 815 IPR044974 GO:0006952
Vimu11g04854 1056 Gene3D - 1 123 IPR027417 -
Vimu11g04854 1056 Gene3D Ribonuclease Inhibitor 294 462 IPR032675 -
Vimu11g04854 1056 Gene3D Ribonuclease Inhibitor 526 695 IPR032675 -
Vimu11g04854 1056 Gene3D Ribonuclease Inhibitor 696 866 IPR032675 -
Vimu11g04854 1056 Pfam C-JID domain 878 1031 IPR045344 -
Vimu11g04854 1056 SUPERFAMILY L domain-like 268 471 - -
Vimu11g04854 1056 MobiDBLite consensus disorder prediction 1034 1056 - -
Vimu11g04854 1056 SUPERFAMILY L domain-like 542 822 - -
Vimu11g04854 1056 Gene3D - 129 214 IPR042197 -
Vimu11g04854 1056 MobiDBLite consensus disorder prediction 1039 1056 - -
Vimu11g04854 1056 Pfam NB-ARC domain 5 199 IPR002182 GO:0043531
Vimu11g04854 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 224 IPR027417 -
Vimu11g04854 1056 SUPERFAMILY "Winged helix" DNA-binding domain 201 306 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04854 Vimu-Chr11 68333517 68338888 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04854 570 819 WRKY Transcription Factor Family AT4G12020 27.986 9.78e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04854 - - var:108318722 1438.71