Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04842 ATGACCAGAAGTTCTTCTTCAATTAACATGTCTAACAAGCCTAGATTTCCATCAAATCTTAATGTCTTTGTCATTGATATTGATCTCGAAGTTCTTGAATTCATCGAGAAATCATGCAACAAGAATTCTCATCAAGTTAAGACATGCTCTGAATCTTCAAGTGCGGTCAAACTTTTGGTAGAAAAAGAAATAGACTTTCATTTGATTATCATGGAACTCAATATGCCACTGATCAATGGCTATGAATTTCTGGAATTTCTTGATGACGAAGCAATTGATGTTCCTTTAATTATAACGTCTGAAGATCATACTCTGCCTACCCAAGAGAAGGCTTTAGACATGGAGCTTGCGATTATTGGTTTAAACCCTTATTTGAGGATAAATCTTGATAGCTTGAAAGAAGATGAAAAAGGTGAGACATGTTATGATTCTGATGAAGAAACCGAAGCCGGTAATGATTCTGATGAAAAAGCTGAAGCCGGTGATGATAGTCCCCATAAGAAAGAATAG 510 0.3569 MTRSSSSINMSNKPRFPSNLNVFVIDIDLEVLEFIEKSCNKNSHQVKTCSESSSAVKLLVEKEIDFHLIIMELNMPLINGYEFLEFLDDEAIDVPLIITSEDHTLPTQEKALDMELAIIGLNPYLRINLDSLKEDEKGETCYDSDEETEAGNDSDEKAEAGDDSPHKKE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04842 169 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 106 IPR045279 GO:0009736
Vimu11g04842 169 SUPERFAMILY CheY-like 18 114 IPR011006 -
Vimu11g04842 169 Gene3D - 17 129 - -
Vimu11g04842 169 MobiDBLite consensus disorder prediction 154 169 - -
Vimu11g04842 169 MobiDBLite consensus disorder prediction 135 169 - -
Vimu11g04842 169 ProSiteProfiles Response regulatory domain profile. 21 137 IPR001789 GO:0000160
Vimu11g04842 169 Pfam Response regulator receiver domain 22 115 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04842 Vimu-Chr11 68274175 68274910 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04842 4 104 Response Regulator Gene Family AT4G16110 31.683 3.27e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04842 Response_reg 4.6e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04842 - K02483 vra:106765414 214.927