Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04838 ATGGCCGAAATTTCTTCTACTGAGTTCCCTGAATTCCCATCAATTCTCAATGTTCTTGTCATTGACAGTGACCTCAATGTTCTTGATTTCATCAAGAAAACATGCAACCAGTATTCTTATCAAGTTATGGCATGTTCTGAATCTCTAAATGCTGTCAATATTTTGCGAGAAAGAAAAACGAATATTCATTTGATACTCATTGAAGTTTATATGCCTGTCATGGATGGCTACGAATTCCTGCTATTTGTCAAGAAAGAAGGAATTAATGTTCCTGTCATAGTGATGTCTCATGATGATTCTAAGCCTTGTATAATGAAGACTGTTCAGCTTGGAGCTTGCGATTATTGGAAGAAACCCTTGAATGAGGATATTATGATCAAGAATATGTGGACACATGCTTTTAGGAAGTTTCTAGGGGAAGATAGGACCCAAAAAAATACTGACAGGTTGGATGAGAATGATAAAACAAGAGAAGATGCTTCATCAGTTGTTGATAGGAACAAAAGTAATTTCAGAAAAGATGATGATGTTGATGAATCAGAAAATAGTAATCCACTTGCCACAGGGAAGGATCGTATAGTATGGACACCAGAACTGCATACTAAATTTCTTGATGCTCTTAAAAGAGTTGGACCCGAAAAAGCCGTGCCAAAGAAAATTCTTGAAGCTATGAATATGCCTAACTTGAAAAGAGGACATGTTGCTAGTCATATGCAGAAATACAGAAAATTTTTGAAAGAGCAGGAAGAAAAACAGCAACAACAGAATGAACACAATGAGATGTCAGATAATAAAAAACCAAGGGTCTCAGAAGAAAACAACTTCCAACCTGGTCTGACATGTAACATAGGACCAACAAGAGAGAAATCCTATGATCCAAATGTACAAGTTGCTGAACATTTTCATGCAGAACCAACTTTGACACATGATCTTTCTTATCCTTTGGCAACGTTTCCTAATATTTCCATCACTACCAATTTTCCTCAGTCTTCTGGATTTGGACTAAATAATATGCAGCAGCCAATGATGCGTCCTCAAATTCCTCCAATCAACTTGCAACCATCCTCCATAGTTATTTCTGATAATTCAGCTTCTGTTCCCCAGAATTACAACTTTCGCATGAACATGCCACCTCAATCAATACCAGGTGAAAACAACATAGGTCAATTTTTTCAGTATCAGTACAACAATAGAGCTTCTATGTATTACCCACAGCCTCAAAACGCAGGTTTCTCAAATGGTGTTGTGAGATCTTTTGCTGCCTCCAAAGATATTGATGATCAAACAATCAAGAAGCAGCTAAATTCTACAAACAATGGCCATCACAAGCCCTGA 1335 0.3715 MAEISSTEFPEFPSILNVLVIDSDLNVLDFIKKTCNQYSYQVMACSESLNAVNILRERKTNIHLILIEVYMPVMDGYEFLLFVKKEGINVPVIVMSHDDSKPCIMKTVQLGACDYWKKPLNEDIMIKNMWTHAFRKFLGEDRTQKNTDRLDENDKTREDASSVVDRNKSNFRKDDDVDESENSNPLATGKDRIVWTPELHTKFLDALKRVGPEKAVPKKILEAMNMPNLKRGHVASHMQKYRKFLKEQEEKQQQQNEHNEMSDNKKPRVSEENNFQPGLTCNIGPTREKSYDPNVQVAEHFHAEPTLTHDLSYPLATFPNISITTNFPQSSGFGLNNMQQPMMRPQIPPINLQPSSIVISDNSASVPQNYNFRMNMPPQSIPGENNIGQFFQYQYNNRASMYYPQPQNAGFSNGVVRSFAASKDIDDQTIKKQLNSTNNGHHKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04838 444 Pfam Myb-like DNA-binding domain 195 242 IPR001005 -
Vimu11g04838 444 Pfam Response regulator receiver domain 18 127 IPR001789 GO:0000160
Vimu11g04838 444 CDD REC_typeB_ARR-like 18 134 - -
Vimu11g04838 444 Gene3D - 187 247 - -
Vimu11g04838 444 SMART REC_2 16 129 IPR001789 GO:0000160
Vimu11g04838 444 SUPERFAMILY CheY-like 16 134 IPR011006 -
Vimu11g04838 444 SUPERFAMILY Homeodomain-like 189 247 IPR009057 -
Vimu11g04838 444 MobiDBLite consensus disorder prediction 247 270 - -
Vimu11g04838 444 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 273 IPR045279 GO:0009736
Vimu11g04838 444 MobiDBLite consensus disorder prediction 145 189 - -
Vimu11g04838 444 MobiDBLite consensus disorder prediction 271 289 - -
Vimu11g04838 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 246 IPR017930 -
Vimu11g04838 444 FunFam Two-component response regulator 187 249 - -
Vimu11g04838 444 MobiDBLite consensus disorder prediction 247 290 - -
Vimu11g04838 444 Coils Coil 244 264 - -
Vimu11g04838 444 MobiDBLite consensus disorder prediction 145 180 - -
Vimu11g04838 444 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 243 IPR006447 GO:0003677
Vimu11g04838 444 Gene3D - 14 158 - -
Vimu11g04838 444 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04838 Vimu-Chr11 68259136 68260825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04838 11 255 Response Regulator Gene Family AT2G25180 35.573 9.95e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu11g04838 Response_reg 6.4e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04838 - - vun:114178133 549.28