Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04831 ATGCCATCGGTAACATGGGGCGTGATCCAAGGTCGCAAGGAGAAGCTCGTTTCGAGAGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCCGACGAGTTGCACGACCTCGAACTTCCCTCCACCGTTGACGTCATGCGCGAGCGTGTCGAGTTTCTCCAAAAAATAGGTCTAACTGTCGACGATATCAACAATTACCCTTTGATCTTAGGTTGCAGTGTGTTGCATGCCAGTGTTATTGTTGAGCTTGCTCCAGTTATTAAGTTCCTAAGGGGCCTTGATGTGGAGAAAGATGATATCGGGTATGTGTTGCAGAAGTACCCTGAACTTCTTGGGTTCAAGCTTGAGGGTACTATGAGCACTTCGGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATCGGTCCAATGGTTACTCAGTATCCTTATTTCTTAGGGATGAGAGTTGGCACTCTGATCAAGCCCTTGATTGATTACTTGGTCGATTTAGGGCTACCGAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTACATTCTTGGCTATGATCTTGAGGAAACTGTGAAACCAAATGTGGAATGTTTGATTAGTTTTGGTGTTAGAAGGGAGTGTTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTTGGGCTTCCTCTCAAGGCTAAGTTGTCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGATCCTGAAGGGTTTGCACGGGTGTTGGAGAACATGCCTCAGGTAGTTAGCCTCAACCAGCATGTGATTATGAAACCCGTTGAATTCCTCCTTGGAAGGACTTTAACAGTGGAGGATGTGGCTAGAATGGTGATCAAGTGTCCTCAGTTGGTGGCATTGAGAGTTGAGCTGATGAAAAACAGCTATTACTTCTTTAAGAGTGAGATGGGGAGGCCATTGAAAGAGCTCAAGAGTAAGGGGATAAGATGTTCGTTGAATTGGATGTTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTGCAGGTCCCAGATTCTTTATGGGAGGGAAATTGGAGCTACCGGGTAATGACATAATGTCTGATGACGAAGCTGAGAGCGACGATGAAGTACTATACACAAGAACTGTTTCTCTATAG 1170 0.4496 MPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKIGLTVDDINNYPLILGCSVLHASVIVELAPVIKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTLIKPLIDYLVDLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVLENMPQVVSLNQHVIMKPVEFLLGRTLTVEDVARMVIKCPQLVALRVELMKNSYYFFKSEMGRPLKELKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESAGPRFFMGGKLELPGNDIMSDDEAESDDEVLYTRTVSL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04831 389 Pfam mTERF 53 318 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 PANTHER CGI-12 PROTEIN-RELATED 53 346 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 Gene3D Transcription termination factor 3, mitochondrial 75 159 IPR038538 -
Vimu11g04831 389 Gene3D Transcription termination factor 3, mitochondrial 160 349 IPR038538 -
Vimu11g04831 389 SMART mt_12 283 314 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 SMART mt_12 211 243 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 SMART mt_12 175 206 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 SMART mt_12 62 98 IPR003690 GO:0003690|GO:0006355
Vimu11g04831 389 SMART mt_12 248 278 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04831 Vimu-Chr11 68238445 68239773 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu11g04831 mTERF 3.9e-76 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04831 K15031 - gmx:100809590 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04831 11 68238445 68239773 Vimu8g01594 8 21927890 21929582 PCT