Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04819 ATGGCTTTCACCGCCATTTCCTTTGTCAAGCTCCTTCACCATCTCTCCAAGAAAGCTCTTCACATGAAGCCTCCAACCCTCTTCCGTTCCTTGTCCTACCTTGTCATTGATGTTGCTCCTCCACACGTGTCTTCCCCAAGTCGCAAACTTTCCAATGTTGATCCCAAAGAACTCGGTCAAATGGTAGGGGACAAGAGACTCGACTCTCTCACCCAATTTGGGGACGTCAAAGAACTCGCTGCACTTCTTGAAACCGATCTCAAGCGTGGTATAAGTGACGGCGACGATGATATTAATCGCCGAAAACGTGTTTTCGGTGCCAACGTGTTTACTAGGCCTCCTTCCAGAGGTTTTCTTTCCTTTGTTCTTGAAGCTTTCAAGGATTCCACTATCATCATCCTTTTGTTTTGTGCTGTGCTTTCCCTTGGCTTTGGAATAAAGCAAAATGGGTGGAAGGAGGGGTGGTACGACGGAGGAAGCATCATATTGGCGGTTATTCTCGTTATTGTCGTGTCTTCCGTGAGTAACTTCAACCAATCTAGACAGTTCAAGAAGCTTTCTGCGAAGAGTGGCAACATAGGAGTTGAAGTGGTACGAGGTGGTCGACGCCAGAGCGTGTCGATCTCTGAGGTGGTGGTGGGTGACATTGTGCACTTGAAGATTGGCGATCAGGTTCCCGCGGATGGGTTGTTTCTAGAGGGACATTCGTTGAAGATGGACGAATCCAGCATGTCGGGGGAGAGTGATCACGTGAATGTGAACGCTGACGCAAACCCTTTCTTGTTATCTGGCACAATGGTCGCTGATGGTTTTGCACGCATGCTTGTAACTTCTGTGGGTATGAACACCTCCTGGGGTGCGATGATAGGCTCGATCACGAGAGAGCTTGATGAGGAGACACCTTTGCAAGTGCGTCTCAAGAAATTGACTTCAGCTATTGGCAAGGTTGGTTTGTTTGTGGCTGCACTTGTTTTGGTGGTGTCTATGATGAGATACTTCACGGGAAATACTAGAGATGATCTTGGGAACCGGGAATTTCTCGGGAGAAAGACAAAGTTTGATGATGTCATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACGATTGTGGTGGTTGCCATTCCAGAAGGGTTGCCATTGGCTGTTACGCTGACTTTGGCTTATTCCATGAAGAAAATGATGAGGGATAATGCCATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCGGCAACAACGATCTGCACTGATAAAACTGGTACTCTTACGATGAATGAGATGAAGGTGAGTGAGGTTAGGGTGGGAAAAAAGCTAATATTAGAAGGTGAGAAATTGGCGCCGACTTTAGTCCAATTATTGAAGGAAGGAATTGGGCTGAATACCACTGGAAGTGTTTACCAGCCCCAAGAAATTTCTCTGCCTGAAATTTCAGGTAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGATGGATCTGGGGATGGATATTGATGAAGTGAAGCAGCACTGTGAGATAATTCACGTGGAGACGTTTAACTCTGAGAAGAAGCGAAGTGGGATTCTGATGAGGGAGAAGAAAGGAAGCAACAGGGTGCATACGCACTGGAAAGGTGCTGCTGAGATGATATTGGCGATGTGTTCAAATTACTATGAGAAAACAGGGGAAATCATGATCATGGGTGACGAAGAACGAGCACAAATTGGGAACATTGTGAAGAGCATGGCTACCAAAAGTTTGCGATGCATTGCCTTTGCCCAGAAGAGTTCCAACGGGAATGAAAACATTGAAAAGCTTGAAGAGTCTGAGCTAACATTGTTGGGGATACTTGGACTGAGAGACCCTTGTAGGCCAGGAGTCGAAGCAGCAGTCGAATCCTGCAAGAAAGCTGGAGTGAAGATCAAGATGATCACTGGAGATAATGTGCACACAGCGAGGGCCATAGCCTCAGAATGCGGGATTCTCGAGCCTAATGAAGAATTCGATGAAGAAGCAGTTGTGGAAGGCTTTCAGTTCAGAAATTACTCAGCTGAGGAGAGAATGGATAAAATCGATAGAATCAGAGTGATGGCAAGGTCATCTCCATTTGACAAGCTTTTGATGGTTCAATGTTTAAAGCATAAGGGTGAAGTGGTGGCAGTTACAGGTGATGGCACAAACGATGCACCTGCCCTGAAGGAAGCAGATATTGGACTTTCCATGGGAATAGAAGGCACTGAAGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGATGACAATTTCTCTTCTGTGGTCACAGTACTAAGATGGGGAAGATGTGTGTACACAAACATCCAAAGGTTCATTCAGTTTCAGCTCACAGTTAACATTGCTGCACTTGTAATAAACTTTGTGGCAGCAGTTTCTTCTGGTAAAGTGCCTCTTAATGCTGTGCAGCTCTTGTGGGTTAACCTGATCATGGATACTCTTGGAGCCTTGGCCTTGGCCACTGAGGAACCGACCGATGATCTCATGAAGATGCCACCTGTGGGGAGAGTTGAGCCACTTATAAGTAAAGCTATGTGGAGGAACCTCATTTCACAGGCATTATATCAAGTGTTTGTGTTACTGATTTTGCAATTCAAAGGAAGATCAATCTTTGAAGTGAATGAGAAGGTGAAAAACACTATTATTTTCAACATTTTTGTCCTCTGCCAGGTTTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAAAAGAACATCTTTGAAGGGCTTGGTAAAAACAAGCTGTTCATAGTAATTGTGGGCCTGACTGTGGTTCTTCAGGTTGTGTTGGTTGAGTTTCTGAAGAAGTTTGCGGACACTGAGAGATTGAGTTGGGGCCAATGGGGTGTTTGTGTTGCCATTGGAGCTTTGTCTTGGCCAATTGACCTGCTTGTGAAGTGTATCTCTGTCGGTCCCAACAAATAG 2937 0.4576 MAFTAISFVKLLHHLSKKALHMKPPTLFRSLSYLVIDVAPPHVSSPSRKLSNVDPKELGQMVGDKRLDSLTQFGDVKELAALLETDLKRGISDGDDDINRRKRVFGANVFTRPPSRGFLSFVLEAFKDSTIIILLFCAVLSLGFGIKQNGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFKKLSAKSGNIGVEVVRGGRRQSVSISEVVVGDIVHLKIGDQVPADGLFLEGHSLKMDESSMSGESDHVNVNADANPFLLSGTMVADGFARMLVTSVGMNTSWGAMIGSITRELDEETPLQVRLKKLTSAIGKVGLFVAALVLVVSMMRYFTGNTRDDLGNREFLGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMKVSEVRVGKKLILEGEKLAPTLVQLLKEGIGLNTTGSVYQPQEISLPEISGSPTEKALLSWAVMDLGMDIDEVKQHCEIIHVETFNSEKKRSGILMREKKGSNRVHTHWKGAAEMILAMCSNYYEKTGEIMIMGDEERAQIGNIVKSMATKSLRCIAFAQKSSNGNENIEKLEESELTLLGILGLRDPCRPGVEAAVESCKKAGVKIKMITGDNVHTARAIASECGILEPNEEFDEEAVVEGFQFRNYSAEERMDKIDRIRVMARSSPFDKLLMVQCLKHKGEVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYTNIQRFIQFQLTVNIAALVINFVAAVSSGKVPLNAVQLLWVNLIMDTLGALALATEEPTDDLMKMPPVGRVEPLISKAMWRNLISQALYQVFVLLILQFKGRSIFEVNEKVKNTIIFNIFVLCQVFNEFNARKLEKKNIFEGLGKNKLFIVIVGLTVVLQVVLVEFLKKFADTERLSWGQWGVCVAIGALSWPIDLLVKCISVGPNK 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04819 978 Gene3D - 427 617 IPR023299 GO:0000166
Vimu11g04819 978 Gene3D - 96 293 - -
Vimu11g04819 978 SFLD Haloacid Dehalogenase 399 770 - -
Vimu11g04819 978 SFLD p-type atpase 399 770 IPR044492 -
Vimu11g04819 978 NCBIfam HAD-IC family P-type ATPase 361 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04819 978 NCBIfam HAD-IC family P-type ATPase 688 799 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04819 978 SUPERFAMILY HAD-like 415 822 IPR036412 -
Vimu11g04819 978 SMART Cation_ATPase_N_a_2 75 146 IPR004014 -
Vimu11g04819 978 PRINTS P-type cation-transporting ATPase superfamily signature 610 621 - -
Vimu11g04819 978 PRINTS P-type cation-transporting ATPase superfamily signature 741 753 - -
Vimu11g04819 978 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Vimu11g04819 978 PRINTS P-type cation-transporting ATPase superfamily signature 632 642 - -
Vimu11g04819 978 PRINTS P-type cation-transporting ATPase superfamily signature 717 736 - -
Vimu11g04819 978 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Vimu11g04819 978 Gene3D - 414 762 IPR023214 -
Vimu11g04819 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 73 972 IPR023298 -
Vimu11g04819 978 PANTHER CATION TRANSPORTING ATPASE 46 973 - -
Vimu11g04819 978 Gene3D - 124 972 - -
Vimu11g04819 978 FunFam Calcium-transporting ATPase 734 976 - -
Vimu11g04819 978 NCBIfam calcium-translocating P-type ATPase, PMCA-type 67 973 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu11g04819 978 Pfam E1-E2 ATPase 195 396 - -
Vimu11g04819 978 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 423 622 IPR023299 GO:0000166
Vimu11g04819 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 419 425 IPR018303 -
Vimu11g04819 978 FunFam Calcium-transporting ATPase 612 762 - -
Vimu11g04819 978 Pfam Cation transporter/ATPase, N-terminus 74 141 IPR004014 -
Vimu11g04819 978 Pfam Cation transporting ATPase, C-terminus 802 971 IPR006068 -
Vimu11g04819 978 FunFam Calcium-transporting ATPase 427 617 - -
Vimu11g04819 978 SUPERFAMILY Calcium ATPase, transduction domain A 195 291 IPR008250 -
Vimu11g04819 978 Pfam haloacid dehalogenase-like hydrolase 414 731 - -
Vimu11g04819 978 FunFam Calcium-transporting ATPase 170 293 - -
Vimu11g04819 978 PRINTS H+-transporting ATPase (proton pump) signature 570 588 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04819 978 PRINTS H+-transporting ATPase (proton pump) signature 749 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04819 978 PRINTS H+-transporting ATPase (proton pump) signature 717 733 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04819 Vimu-Chr11 68162620 68165788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04819 44 974 Primary Pumps ATPases AT3G63380 65.488 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04819 K01537 - gmx:100784119 1495.72