Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04818 ATGTCTGACAGACCTAGATTTCCATCAAATCTTAATGTCCTTGCCATTGATACTGATCTCGAAGTTCTTGAATTCATCGAGAAATCATGCAACAAGAATTCTCATCAAGTTAAGACATGCTCTGAATCTTCAAGTGCGGTCAAACTTTTGGTAGAAAAAGAAATAGACATTCATTTGATTATCATGGAACTCAATATGCCACTGATCAATGGCTATGAATTTCTGGAATTTCTTGATGACGAAGCAATTGATGATCGTACTCTGCCTACCCAAGAGAAGGCTTTTAGACATGGAGCTTGCGATTATTGGTTTAAACCCTTATTTGACTTGAAAGAAGATGAAAAAGGTGAGACAGGTTATGATTCTGATGAAGAAGCCGAAGTCGGTAATGATTCTGATGAAGAAGCTGAAGCCGGTGACGATAGTCCCCATAAGAAAGAATAG 444 0.3806 MSDRPRFPSNLNVLAIDTDLEVLEFIEKSCNKNSHQVKTCSESSSAVKLLVEKEIDIHLIIMELNMPLINGYEFLEFLDDEAIDDRTLPTQEKAFRHGACDYWFKPLFDLKEDEKGETGYDSDEEAEVGNDSDEEAEAGDDSPHKKE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04818 147 MobiDBLite consensus disorder prediction 118 137 - -
Vimu11g04818 147 Pfam Response regulator receiver domain 13 82 IPR001789 GO:0000160
Vimu11g04818 147 ProSiteProfiles Response regulatory domain profile. 12 147 IPR001789 GO:0000160
Vimu11g04818 147 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 107 IPR045279 GO:0009736
Vimu11g04818 147 MobiDBLite consensus disorder prediction 114 147 - -
Vimu11g04818 147 Gene3D - 7 115 - -
Vimu11g04818 147 SUPERFAMILY CheY-like 9 107 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04818 Vimu-Chr11 68160048 68160739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04818 6 107 Response Regulator Gene Family AT4G31920 29.358 8.41e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04818 Response_reg 2.6e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04818 - K14491 vra:106765414 215.312