Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04816 TTGAATTTTCAGGCAGACGTTGAGGTCGATGTCGCGGCAGCGGGGCAGCCCAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGCGTGGATCTCGATGCTCTTCTTGATATGTCCACAGATGAACTTGTCAAGCTTTTCAGTGCTCGCGCACGTAGAAGGTTCCAGAGAGGTCTAACCAGAAAGCCCATGGCCTTGATCAAGAAGCTTCGCAAAGCGAAAAGGGAAGCTCCAGCAGGTGAGAAGCCAGAACCAGTGCGCACCCACCTCCGCAACATGATCATTGTTCCTGAGATGATTGGTAGCATCATAGGAGTATACAATGGCAAGACCTTTAACCAGGTTGAAATCAAACCTGAGATGATTGGGCATTATTTAGCCGAGTTTTCTATCTCATACAAGCCCGTTAAGCACGGGAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTTATTCCTCTCAAGTGA 468 0.4808 MNFQADVEVDVAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04816 155 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 13 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 FunFam 40S ribosomal protein S15 12 155 - -
Vimu11g04816 155 PRINTS Ribosomal protein S19 family signature 88 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 PRINTS Ribosomal protein S19 family signature 108 120 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 PRINTS Ribosomal protein S19 family signature 120 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 NCBIfam 30S ribosomal protein S19 22 155 IPR005713 GO:0003735|GO:0006412|GO:0015935
Vimu11g04816 155 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 11 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 Pfam Ribosomal protein S19 53 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 SUPERFAMILY Ribosomal protein S19 58 139 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 Hamap 30S ribosomal protein S19 [rpsS]. 51 144 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu11g04816 155 ProSitePatterns Ribosomal protein S19 signature. 108 132 IPR020934 GO:0003723
Vimu11g04816 155 Gene3D 30s Ribosomal Protein S19; Chain A 11 155 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04816 Vimu-Chr11 68139959 68141404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04816 10 155 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 90.411 2.32e-94 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04816 K02958 - csav:115721855 293.893