Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04794 ATGGAAAAGCTCTTTTTCAACTGTTTCATTGGATGCTGTCTTCTTTTTTCTCTCTTGCCTGTGCATGGCAAACCATTGTCATGCAATGAAACACCCTACCCCCATGTGTGCAAACATTACGTTGTCACTACCAACACACTATCAACCCTAGATGCTCCTTCCTCTTCCTTCCACGATGTGGCCCTTAAGGTCACCGTGGATCAAGCCATGGAGGTTTATAAACTTGTCTCAAACATGGACCTAAATAATTTCAAGGACAAGCGAGCCAAGTCGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAGCGAACTCGAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCACCAAACATGCCAAAATGGTTTCACTGAACTCAACGTTCCCTCTCACCTAAACTACTTCCCCAACATGTTAAGCAATTTCTCCAAACTGCTTAGCAATTCATTGTCCCTTAGCAAGGCTATGACTTTGACATCATTGTCATCGACTAAACAAAATGGTGGGCGGAAGTTGCTTTCCGATGGCTTCCCCTCTTGGATCTCACGTTCAGACAGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTCGTGGTGGCACAGGATGGCAGTGGGAACTATAAAACCATCTCAGAGGGTGTGGCTGCAGCTTCTAAGCTCAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCCGGTGTTTACAAAGAGAATATTGATATCGCGAGAACTGTGAAAAACTTGATGATCATCGGAGATGGCATGGGTGCTACTATTGTTACTGGTAGTAAAAACGCCCAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTTCCGGAGACGGCTTCATTGCTCGGGACATCACCTTCGAAAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGAGCCGACCACTCGGTGTTTTATCGGTGCAGCTTTAAGGGGTACCAAGACACCTTATACGTGTACGCCAACCGCCAATTCTACCGTGACTGTGACATATACGGAACCTTAGACTTCATTTTCGGGGACGCCGTGTCGGTGCTTCAAAACTGCAACATCTACGTGAGGAAGCCGATGAGCAACCAGCAGAACACGGTTACAGCACAAGGAAGAACCGACCCTAACGAGAACACAGGCATCATCATCCATAACTGTCTCATCACTGCAGCTGGGGACCTGAAAGCGGTGCAGGGCTCTTTTAAAACCTATCTGGGTCGCCCCTGGCAAAAGTACTCAAGGACTGTCATCATGAAGAGTGCCCTTGATGGCTTGATTAACCCTGCAGGTTGGTCTGAGTGGAGCGGAAACTTTGCACTGAGCACTCTATATTACGGTGAACATGCGAACACAGGAGCAGGTGCCGGCACCGGAGGGAGGGTGAAATGGGGAGGGTTTCGTGTGCTCTCCAGCGCTGAGGCTGTGAAGTTCACCGTCGGAGAATTCTTGGCCGGGGGATCGTGGATTCCTGGGAGTGGCGTGCCCTTTGACGCAGTGGGGAGGACTTGGGCGGTGTTGTTTCCAAATTGGGACATAACAACTTCCTTAAAGAAAGGAAAACTAAATTGTCATGTAGAGGGTACACAAAATGCTGTACTTCAGGTTGTGGGTTTCGTCTTCCCTTGCCTTAAGGACACTCTGTTCCTTTTGTCGACAGAACTTCAAGGAAGCATCGATTCATCCATGATGATACTTGATAGATAG 1770 0.4825 MEKLFFNCFIGCCLLFSLLPVHGKPLSCNETPYPHVCKHYVVTTNTLSTLDAPSSSFHDVALKVTVDQAMEVYKLVSNMDLNNFKDKRAKSAWEDCLELYEDTLYQLKRSANSNNLNDRLTWQSASIANHQTCQNGFTELNVPSHLNYFPNMLSNFSKLLSNSLSLSKAMTLTSLSSTKQNGGRKLLSDGFPSWISRSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAASKLSGKGRVVVHVKAGVYKENIDIARTVKNLMIIGDGMGATIVTGSKNAQDGSTTFRSATFAVSGDGFIARDITFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTLDFIFGDAVSVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIIIHNCLITAAGDLKAVQGSFKTYLGRPWQKYSRTVIMKSALDGLINPAGWSEWSGNFALSTLYYGEHANTGAGAGTGGRVKWGGFRVLSSAEAVKFTVGEFLAGGSWIPGSGVPFDAVGRTWAVLFPNWDITTSLKKGKLNCHVEGTQNAVLQVVGFVFPCLKDTLFLLSTELQGSIDSSMMILDR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04794 589 CDD PMEI-like_3 26 143 - -
Vimu11g04794 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 171 IPR035513 -
Vimu11g04794 589 SUPERFAMILY Pectin lyase-like 206 519 IPR011050 -
Vimu11g04794 589 PANTHER PECTINESTERASE 26 512 - -
Vimu11g04794 589 SMART complete 245 425 IPR006633 -
Vimu11g04794 589 Pfam Pectinesterase 211 507 IPR000070 GO:0030599|GO:0042545
Vimu11g04794 589 Gene3D - 205 521 IPR012334 -
Vimu11g04794 589 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Vimu11g04794 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Vimu11g04794 589 SMART PMEI_2 21 166 IPR006501 GO:0004857
Vimu11g04794 589 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Vimu11g04794 589 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Vimu11g04794 589 FunFam Pectinesterase 25 170 - -
Vimu11g04794 589 FunFam Pectinesterase 205 521 - -
Vimu11g04794 589 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04794 Vimu-Chr11 68010143 68013839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04794 2 519 Carbohydrate Esterase AT1G23200 50.817 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04794 - - gmx:100775898 910.598