Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04792 ATGGGTATAAAGAGATACAGTTTCTCTGATGTTAAGAAAATGACCGACTCCTTCAAAATTAAACTGGGGGAAGGTGGTTATGGATCTGTGTACAAAGGAAAGTTACTCAACGGTTGTTCGGTGGCAGTAAAGATACTGAACGAATCAAAGGAGAATGGCGAAGAGTTTATCAATGAGGTTGCTAGCATAAGCAAAACATCTCATGTTAACATTGTCTCTCTCCTTGGATTCTGCCTAGATGGAAGCAGAAAAGCCCTCGTGTATGAGTTTATGTCCAATGGTTCACTTGAGAAGTACATTCACAAGAAATCAGCAGACAAAAATAAAACAACTTCTCCACCCTTGGGTTGGGACAGGTTGAACCAGATTGCAATAGGCATAGCTCGAGGACTTGAGTATTTGCATAAAGGATGCAACACTCGGATTCTGCATTTTGACATCAAGCCACATAACATCCTTTTGGACGAAACTTATCGCCCAAAGATATCCGATTTTGGACTTGCTAAGCTGAGCACAATAGATGAAAGCATTATATCAATGTCAAATGCTAGAGGGACAGTAGGGTATGTGGCTCCTGAAGTGTTCAATAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTACTAGAAATGGTTGGAGGACAGAAGAACATCAACGTTGAAGCTAGTCGCTCAAGCGAACTATATTTCCCACACTTGGTTATTTACAAGAAGCTTGAGCAGGGCAATGATTTGGGACTTGATGGGATATTGTCTGGTGAGGAGAATGAGATAGCAAAGAGAATGACTATGGTGGCTTTGTGGTGCATTCAGACAATTCCTTCTCACAGACCTACCATAAGTAGAGTGATTGACATGTTGTTAGGTAGTGCGGATTCCTTGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCAAGATCAACAGATTTTTCCACTGCAATGTCCCAATCATTTGATAGTCTCTCATGCAGCTCATAG 1002 0.4132 MGIKRYSFSDVKKMTDSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALVYEFMSNGSLEKYIHKKSADKNKTTSPPLGWDRLNQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTIDESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPHLVIYKKLEQGNDLGLDGILSGEENEIAKRMTMVALWCIQTIPSHRPTISRVIDMLLGSADSLEMPPKPFLSSPPRSTDFSTAMSQSFDSLSCSS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04792 333 PIRSF ILK 6 300 - -
Vimu11g04792 333 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 315 IPR045874 GO:0004672
Vimu11g04792 333 Gene3D Transferase(Phosphotransferase) domain 1 91 303 - -
Vimu11g04792 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vimu11g04792 333 ProSiteProfiles Protein kinase domain profile. 16 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04792 333 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vimu11g04792 333 SMART serkin_6 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04792 333 MobiDBLite consensus disorder prediction 305 333 - -
Vimu11g04792 333 SUPERFAMILY Protein kinase-like (PK-like) 3 327 IPR011009 -
Vimu11g04792 333 Pfam Protein kinase domain 21 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04792 333 MobiDBLite consensus disorder prediction 312 333 - -
Vimu11g04792 333 ProSitePatterns Protein kinases ATP-binding region signature. 22 44 IPR017441 GO:0005524
Vimu11g04792 333 FunFam serine/threonine-protein kinase PBS1-like 1 90 - -
Vimu11g04792 333 FunFam PR5-like receptor kinase 91 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04792 Vimu-Chr11 67986346 67990576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04792 3 312 Receptor kinase-like Gene Family AT5G38280 57.962 1.90e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu11g04792 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04792 - - vra:106766588 662.144