Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04791 ATGGCCGCCAAACGGTTTTTGGATGATTCTGATCAAGATAACAATGGTGATAAACGGATGAGACCTACTTCAAGACCTTCTTTTGCTTCGGTAATAGGAGAAGTCGTCATGGTCAAGAACTTGCAGAACCTTTTCTCAGGCTTGGAACCCTTGCTTAGGAGAGTGGTGAACGAAGAGATGGAGCGAGTGATGGGGCATTGTGTGCCGCGTTCGATAACCAGGTCTCCTTCGTTGAGGATCCAAGCATTGGAGCAACCAACGAGCTACGAACTCATGTTCGAGAAGAAGCTAATGCCAACTATATTCACTGGAAGCAGAATAGTAGATACAGATGGGAACCCCCTCCGTGTTGTTCTTGTTGACAAAAACGGTGGTCAGACGGTTCGCACGAGTCTCCCCCACCCCATCAAGCTAGAAATCGTGGTGCTCGATGGAGATTTTCCTTCCAACAGTGATAACAACGAGTCGTGGACGAGTGAGGAACTCAACAACCGCATAGTGAAGGAGAGAACGGGAAAGAGGCCGCTGCTCACTGGAGAATTGAATCTGACCATGAGAGATGGAATTGCACCAGTTGAAGACATTGAATTCACTGATAATTCCAGTTGGATAAGAAGCAGAAAGTTCAGAGTTGCTGTTCGAGTTGTTCCTGGGACTAATCAAACTGTTAGAATTCGTGAAGGCATGACCGAACCATTTATTGTCAGGGATCACCGTGGTGAATTGTACAAGAAACATCACCCACCCATGCTGAATGACGAAGTGTGGCGCCTAGAGAAGATCGGAAAAGACGGAGCTTTCCACAAAAAACTGTCCAGAGAGGGAATAAACAGTGTGCAAGACTTTCTCAAGTTGTCTGTTGTTGATGGCCAGAAGCTCAGAAAGATTTTGGGCGCTGGGATGTCAGAGAGAATGTGGGATGTGACAATCAAGCATGCAAAGACTTGTGAGAAGGGGAAGAAATACTATGTTTTCCGTGGGCAAAATTTTACCATCTTTCTCAATTCCATTTGCCAATTGGTTAAAGCTGAAATTAATGGGCAAAGTTTTCCGGGAAGCGAGTTAAGCAACTTCACAAAGGGCTATATGGAAAAATTGGTGAGAGAAGCATATACTAGATGGAATGACTTGGAGGAAATTGACGAGGCTCTGTTAACCCAAGGTGAGAGCATGGAGCAAATTCCAAACAATCTTGGTGTAGCATATGATCAGAACGAGTACTATGCATCAACACATAACGCACAGATTGGGGGCAGCGAATGGGGTGTGAATGCAACATTTGGCACAACATCATTTGTGAATAACGCTCTTCCAGCTTTACCTTACAGCTTTTCAGATTCACAATCTGACAGTGATGGTGCCACAAGACCCTCTTCTTCCCAATACGGAATAGGCTATGCTGTATTGGTCCTGATGTTCATCAAAATTGCATTTGTTTGCTCTGTTTCTACCCTGTTTCTCTTCTTCACCAATACCTCTGCCATCCACAACACATCATTCTCACCAACTTGCCTTACTCAACGCTGCACATCTGGACCTAACATCAGCTACCCTTTTTGGCTTTCCCTTACTGACCAACTCTGCGGTTACCATGAACTTGGCCTTCTCTGTAGTGGCGGCGTCACAATTTTTTCTCACGTAGGATTATACTATGCGGTACAAAATATAGACTATGAGAACCATAGCCTTAAGCTGCTGGATCCTGACACTTTCAGCCAAACCTGTCCAAAGGCACGTCACGCTGTCCCCTTAGGCAACCTACCGCTTACTCACTCCCCCTTGAACTTAAACCTTAGCTTTTACTACAACTGCACTAACTACCCTTCTGGTGTGCCTTCTATCCAGTGTCTCCGTTCTGGGGCAAACCAGTCTTTTGTGTTTGTGTCGGGGAACGAGACCAGAGGTTTTGACTGGTCCGGGAACTGTGAGGAAAAGATTGTGGTCACAGTGATGAAGGATGCTATTACAAGTGACGGTGACTTGATAAGCCAGTTTCCGAGTGCCATGGATAAAGGGTTTGTTCTTGAATGGCACACTGCTTCGTATTGCGTTCAGTGCGAGGCTAGTGATGGAGTCTGCGGCTACAGTAACCCCGAGAAGAAGGGACTAGAAGAGCTGAATTACCTTCTACTTTTGCTTGCAGGTTTTATTGTAGCTGGAGGAACTGGTGCACTGCTGACATGCGTCGTAATTTACATTTTTGGAAGAAAATTGTCACCAATTTTGTCAGACATTCGACAGGCGAGAAAGATTGATCGAGACATTGAGGCTTTCATCAGAAATAATGGACCACTTCCCATAAAAAGGTACTCATATTCAGATATCAAGAAAATGACCAATTATTTTGAGTCCAAACTGGGCCAAGGTGGTTATGGTCAAGTATATAAGGGAAATCTATGCAACAAAGCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGTAGAACATCCCATGTAAATATCGTTAATCTCCTTGGTTTCTGTCTTGAAGGCAAGAAGAAGGCTATTATATACGATTTTATGCCAAATGGATCACTTGAAAAGTATATTCACAACAAGAATTTGGAAACTGATCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCTGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGCTGCAACACTCGGATATTACATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCTAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAAACACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTACATAGCTCCAGAGGTGTGGAACAGAAGCTTTGGAGGGGTTTCGTATAAATCTGATGTTTATAGTTATGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCCCATTGGATATACAAGCACGTTGAGGTGGGAAAAAATTTGGCATGGCATGAAGGTATGATCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTGTGGTGCATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGATCAATTGCAAATTCCACCAGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACTAGTAGCAGCGATTGA 3258 0.4374 MAAKRFLDDSDQDNNGDKRMRPTSRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVNEEMERVMGHCVPRSITRSPSLRIQALEQPTSYELMFEKKLMPTIFTGSRIVDTDGNPLRVVLVDKNGGQTVRTSLPHPIKLEIVVLDGDFPSNSDNNESWTSEELNNRIVKERTGKRPLLTGELNLTMRDGIAPVEDIEFTDNSSWIRSRKFRVAVRVVPGTNQTVRIREGMTEPFIVRDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSREGINSVQDFLKLSVVDGQKLRKILGAGMSERMWDVTIKHAKTCEKGKKYYVFRGQNFTIFLNSICQLVKAEINGQSFPGSELSNFTKGYMEKLVREAYTRWNDLEEIDEALLTQGESMEQIPNNLGVAYDQNEYYASTHNAQIGGSEWGVNATFGTTSFVNNALPALPYSFSDSQSDSDGATRPSSSQYGIGYAVLVLMFIKIAFVCSVSTLFLFFTNTSAIHNTSFSPTCLTQRCTSGPNISYPFWLSLTDQLCGYHELGLLCSGGVTIFSHVGLYYAVQNIDYENHSLKLLDPDTFSQTCPKARHAVPLGNLPLTHSPLNLNLSFYYNCTNYPSGVPSIQCLRSGANQSFVFVSGNETRGFDWSGNCEEKIVVTVMKDAITSDGDLISQFPSAMDKGFVLEWHTASYCVQCEASDGVCGYSNPEKKGLEELNYLLLLLAGFIVAGGTGALLTCVVIYIFGRKLSPILSDIRQARKIDRDIEAFIRNNGPLPIKRYSYSDIKKMTNYFESKLGQGGYGQVYKGNLCNKAPVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGKKKAIIYDFMPNGSLEKYIHNKNLETDPPLSWQRLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRSFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGKNLAWHEGMIPEENEICKKMIIVGLWCIQTIPSDRPAMSRVVEMLEGSTDQLQIPPEPFIFSPMKTEVDICTTSSSD 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04791 1085 Gene3D Transferase(Phosphotransferase) domain 1 855 1063 - -
Vimu11g04791 1085 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g04791 1085 Pfam Calmodulin binding protein central domain 250 316 IPR046830 -
Vimu11g04791 1085 SMART serkin_6 780 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04791 1085 Pfam Wall-associated receptor kinase C-terminal 616 700 IPR032872 -
Vimu11g04791 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Vimu11g04791 1085 Gene3D Phosphorylase Kinase; domain 1 759 854 - -
Vimu11g04791 1085 Pfam Protein tyrosine and serine/threonine kinase 782 1053 IPR001245 GO:0004672|GO:0006468
Vimu11g04791 1085 SUPERFAMILY Protein kinase-like (PK-like) 761 1054 IPR011009 -
Vimu11g04791 1085 Pfam Wall-associated receptor kinase galacturonan-binding 504 567 IPR025287 GO:0030247
Vimu11g04791 1085 PANTHER RUST RESISTANCE KINASE LR10-RELATED 752 1070 IPR045874 GO:0004672
Vimu11g04791 1085 Pfam Calmodulin binding protein-like N-terminal domain 89 238 IPR046831 -
Vimu11g04791 1085 FunFam PR5-like receptor kinase 855 1065 - -
Vimu11g04791 1085 ProSiteProfiles Protein kinase domain profile. 780 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04791 1085 Pfam Calmodulin binding protein C-terminal domain 321 380 IPR046829 -
Vimu11g04791 1085 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Vimu11g04791 1085 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04791 Vimu-Chr11 67976128 67985672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04791 506 1068 Receptor kinase-like Gene Family AT5G38260 39.933 9.94e-129 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu11g04791 Calmodulin_bind 7e-127 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04791 - - gmx:100781977 914.835