Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04784 ATGGCGAAGAACGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATCGATTATTTTCATTGCATGAAATGCAATTGTTGCTTGGGGATTAAGTCAGCATCTCATAAATGTCTCGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGCGATGACTTGTTCACTTCAAGTGCTACGGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTTCAGGTCTATTTCAAAGCTGTTTTCGGTTTTAGGTTTCAATGCTATCACCAAACCAGGGGGTGGTAA 306 0.4216 MAKNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQVYFKAVFGFRFQCYHQTRGW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04784 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 97 IPR013083 -
Vimu11g04784 101 Pfam Ring finger domain 51 85 IPR001841 -
Vimu11g04784 101 SUPERFAMILY Zinc hairpin stack 3 45 IPR037275 -
Vimu11g04784 101 ProSiteProfiles Zinc finger RING-type profile. 52 94 IPR001841 -
Vimu11g04784 101 SUPERFAMILY RING/U-box 50 88 - -
Vimu11g04784 101 FunFam Zinc finger protein-related isoform 1 47 88 - -
Vimu11g04784 101 ProSiteProfiles Zinc finger CTCHY-type profile. 1 51 IPR017921 -
Vimu11g04784 101 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 83 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04784 3 83 C2H2 Transcription Factor Family AT3G18290 80.247 6.07e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04784 K16276 - gmx:100803002 185.652