Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04780 ATGAGCATGGTCCAATCCTACACGTCCTCCATAACATGCAAGAAGAGGTGGAGAATGGCTTTGAATGCCATCTCTTTCGTCAAGGCTCTTCTTCATGTCTCCAACAAAGCTTTCAAAATTCGAACTCCAAGGCTATTGCGCTCATTCTCGTATCTGGCCATTGATGTTGAACAAGACCGCTTGCATACCCCACATGAGAAACCCTTCAACGTTGATCCCAATCTTCTCAGTCACATGGTAAGGGACAAGACGCTCGATTCTCTCACCCAATTTGGAGGCGTCAAGGAACTCGCTTCACTTCTTGAAACCGATGTAAAGGGTGGCGTAAGCGACAACAAGGATGATCTTGATCACCGAAAACGTGTCTTTGGTGTCAACATGTTCACGAAACCTCCATCTAAAGGTTTTTTATCTTTTGTTCTTGAATCTTTTAAGGACACCACTATTATCATCCTTTTGGCTTGTGCTTTGCTTTCTCTTGGCTTTGGGATCAAGCAGCATGGATGGAAGGAGGGCTGGTACGATGGAGGAAGCATTATATTGGCGGTTATTCTCGTCATTGTGGTCTCTTCCGTGAGCAACTTCAATCAATCTAGACAGTTCCAGAAGCTTTCTGCCAAGAGTGAGAACATAGGAGTCGAAGTAGTACGAGGTGGTCGACGCCGAAGCGTGTCAATCTTTGATGTGGTGGTTGGTGACATTGCGTACCTGAAGATCGGTGATCAGGTTCCAGCTGATGGAGTGCTTTTGGAAGGGTATTCGTTGAAGGTGGACGAATCTAGCATGACGGGGGAGAGTGATCACGTTCACGTGAACGCTGACACGAACCCTTTCTTGTTATCTGGCACAAAGATCAGTGATGGTTTTGCATACATGCTTGTCACTTCTGTGGGCGTGAACACTGCCTGGGGTGAAATGATGGGTTCGGTAGCGAGAGAGGTTAATGAGGAGACACCTTTGCAAGTGCGTCTTAATAAATTGACCTCTGCTATCGGCAAGGTTGGGCTGTTGGTGGCTGCGCTTGTTTTGGTGGTATCTATGATACGTTACTTCACAGGAAGTACCAGAGATGATTTTGGTAACCGAGAATTCGTTGGGAGGAAGACAAAGTTTGATGATGTTATGAATGCGGTTGTGGGGATTGTTGCTGCAGCTGTGACAATTGTGGTGGTGGCGATTCCAGAAGGGTTGCCTCTGGCTGTTACTTTGACTTTGGCTTATTCCATGAAGAAAATGATGCGGGATAATGCTATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCAGCAACAACAATCTGCACGGATAAAACTGGTACTCTTACGATGAATGAGATGCAGGTGACTGAGGTTTGGGTGGGAAAGGAGGAAATAGCAGAAGGTGCGTATTTGGCACCGAGTTTAGTACAATTATTGAAAGAAGGAATTGGGTTGAATACCGCAGGAAGCGTTTACCAGACCCAACAAACCTCTCCGCCAGAAATTTCAGGTAGTCCAACTGAGAAAGCATTGCTTTCTTGGGCTGTTGTGGATTTGGGGATGGACATTGATGTTGTGAAGCAGCATTGTGAAATCATTCATGTGGAGACGTTTAACTCTGAGAAAAAGAGAAGTGGGATTTTGATGAGGGAGAAGAGAGGGAGCAACAGGATCGTTACACATTGGAAGGGTGCTGCTGAGATGATATTGGGTATGTGTTCAAGTTATTATGGCCGGACAGGGGAAATCATGATCTTTAATGATGAAGAAAGGGTTCAGATTGAGAACATTGTGAAGGGCATGGCTACCAAAAGTTTGCGATGCATTGCCTTTGCCCAAAAGAGCTCCAATGGGAAGGTCTGTGAAAAGCTTGAAGAGACAGAACTAACACTGTTGGGAATACTTGGATTGAAAGATCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGAATCATGTAGGAATGCTGGAGTGAAGATCAAGATGATCACAGGAGATAATGTGCACACAGCGAAGGCCATAGCCTCTGAATGCGGGATTCTTGATCCTACTGAAGAATTGGACGAAGATGCTGTGGTTGAAGGGTTTCAATTCAGAAATTACTCGCATGAGGAAAGAATGGAAAAGATTGACAGAATCAGGGTCATGGCCAGATCATCTCCATTTGACAAGCTTTTGATGGTTCAATGTTTAAAGCAGAAGGGTAATGTGGTGGCAGTCACAGGTGATGGCACAAATGACGCACCTGCTCTAAAAGAAGCAGATATTGGACTTTCCATGGGAATAGAAGGCACTGATGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGACGACAATTTCTCTTCTGTGGTTACAGTAATCAGGTGGGGAAGATGTGTGTACAGAAACATTCAGAAGTTCATTCAGTTTCAGCTGACAGTTAATGTTGCTGCACTGGTCATAAACTTCGTAGCTGCAGTTTCTTCTGGTAAAGTGCCTCTTACAGCAGTCCAGCTTTTGTGGGTAAACCTGATAATGGATACCCTTGGAGCATTGGCTTTAGCTACCGAGGAACCTACTGATGATCTCATGAAGATGGCACCTGTAGGTAGAGTTGAGCCACTGATAACTAGAGTTATGTGGAGGAACCTGATTTCACAGGCATTGTACCAGGTTATGGTGTTGCTGGTTTTAGAATTCAGGGGAAGATCAATCTTTGATGTTAGTGAGAAGGTGAAGAATACTATTATCTTCAATTCTTTTGTCCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGGAGATGGAGAAGAAGAACATATTTAAGGGACTTGGTAAGAATAGGTTGTTCATTGTAATTGTGAGCCTAACTGTTGGTCTTCAGCTAGTGATGGTTGAGTTTCTGAAAAAGTTTGCCAATACTGAGAGATTGACTTGGGAGCAATGGGGTGTTTGTGTTACCATTGGAGCTTTGTCTTGGCCAATTGGTGTGCTGGTGAAGTGTATCCCAGTTCTTCGCAAGAAGTAG 2988 0.4461 MSMVQSYTSSITCKKRWRMALNAISFVKALLHVSNKAFKIRTPRLLRSFSYLAIDVEQDRLHTPHEKPFNVDPNLLSHMVRDKTLDSLTQFGGVKELASLLETDVKGGVSDNKDDLDHRKRVFGVNMFTKPPSKGFLSFVLESFKDTTIIILLACALLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFQKLSAKSENIGVEVVRGGRRRSVSIFDVVVGDIAYLKIGDQVPADGVLLEGYSLKVDESSMTGESDHVHVNADTNPFLLSGTKISDGFAYMLVTSVGVNTAWGEMMGSVAREVNEETPLQVRLNKLTSAIGKVGLLVAALVLVVSMIRYFTGSTRDDFGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMQVTEVWVGKEEIAEGAYLAPSLVQLLKEGIGLNTAGSVYQTQQTSPPEISGSPTEKALLSWAVVDLGMDIDVVKQHCEIIHVETFNSEKKRSGILMREKRGSNRIVTHWKGAAEMILGMCSSYYGRTGEIMIFNDEERVQIENIVKGMATKSLRCIAFAQKSSNGKVCEKLEETELTLLGILGLKDPCRPGVEAAVESCRNAGVKIKMITGDNVHTAKAIASECGILDPTEELDEDAVVEGFQFRNYSHEERMEKIDRIRVMARSSPFDKLLMVQCLKQKGNVVAVTGDGTNDAPALKEADIGLSMGIEGTDVAKESSDIVILDDNFSSVVTVIRWGRCVYRNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEEPTDDLMKMAPVGRVEPLITRVMWRNLISQALYQVMVLLVLEFRGRSIFDVSEKVKNTIIFNSFVLCQVFNEFNAREMEKKNIFKGLGKNRLFIVIVSLTVGLQLVMVEFLKKFANTERLTWEQWGVCVTIGALSWPIGVLVKCIPVLRKK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04780 995 Pfam haloacid dehalogenase-like hydrolase 432 748 - -
Vimu11g04780 995 Pfam E1-E2 ATPase 213 414 - -
Vimu11g04780 995 NCBIfam HAD-IC family P-type ATPase 705 816 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04780 995 NCBIfam HAD-IC family P-type ATPase 379 461 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04780 995 SFLD p-type atpase 417 787 IPR044492 -
Vimu11g04780 995 Pfam Cation transporter/ATPase, N-terminus 92 159 IPR004014 -
Vimu11g04780 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 92 993 IPR023298 -
Vimu11g04780 995 SFLD C1.7: P-type atpase like 417 787 - -
Vimu11g04780 995 Gene3D - 142 982 - -
Vimu11g04780 995 PANTHER CATION TRANSPORTING ATPASE 64 991 - -
Vimu11g04780 995 SUPERFAMILY HAD-like 433 839 IPR036412 -
Vimu11g04780 995 Gene3D - 432 779 IPR023214 -
Vimu11g04780 995 FunFam Calcium-transporting ATPase 445 634 - -
Vimu11g04780 995 Pfam Cation transporting ATPase, C-terminus 819 988 IPR006068 -
Vimu11g04780 995 Gene3D - 114 311 - -
Vimu11g04780 995 FunFam Calcium-transporting ATPase 188 311 - -
Vimu11g04780 995 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 639 IPR023299 GO:0000166
Vimu11g04780 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Vimu11g04780 995 SMART Cation_ATPase_N_a_2 87 164 IPR004014 -
Vimu11g04780 995 NCBIfam calcium-translocating P-type ATPase, PMCA-type 84 991 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu11g04780 995 PRINTS H+-transporting ATPase (proton pump) signature 588 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04780 995 PRINTS H+-transporting ATPase (proton pump) signature 766 791 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04780 995 PRINTS H+-transporting ATPase (proton pump) signature 734 750 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04780 995 FunFam Calcium-transporting ATPase 628 779 - -
Vimu11g04780 995 SUPERFAMILY Calcium ATPase, transduction domain A 213 310 IPR008250 -
Vimu11g04780 995 Gene3D - 445 634 IPR023299 GO:0000166
Vimu11g04780 995 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Vimu11g04780 995 PRINTS P-type cation-transporting ATPase superfamily signature 649 659 - -
Vimu11g04780 995 PRINTS P-type cation-transporting ATPase superfamily signature 627 638 - -
Vimu11g04780 995 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Vimu11g04780 995 PRINTS P-type cation-transporting ATPase superfamily signature 734 753 - -
Vimu11g04780 995 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Vimu11g04780 995 FunFam Calcium-transporting ATPase 751 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04780 Vimu-Chr11 67925315 67929004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04780 15 991 Primary Pumps ATPases AT3G22910 64.286 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04780 K01537 - gmx:100784119 1550.03