Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04778 ATGTATACATCAAGGAAGAAAATCCACAAGGATAAGGATGCCGAGCCAACTGAGTTTGAAGAGTCAGTTGGGCAGGCACTGTTTGATTTGGAAAACACCAACCAGGAACTTAAAAGTGATCTTAAGGATCTATACATTAATTCAGCCATCCAAATTGATGTTTCTGGGAACCGCAAGGCTGTTGTCATTCATGTTCCATACAGATTAAGGAAAGGTTTCCGCAAGATTCATGTTAGGCTTGTTAGGGAGCTCGAGAAGAAGTTTAGTGGGAAGGATGTTATCTTGGTTGCCACCCGGAGGATATTGAGGCCACCAAAGAAGGGTTCTGCTGTTCAGAGACCACGCAGCCGAACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTTTAGAATTGATGGATCCAAGATCATGAAGGTTTTCTTGGACCCGAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACATTTGCTGCAGTGTACAGGAAGCTTTCTGGCAAAGATGTTGTGTTTGATTATCCTGTCTCGGAGGCTTAG 576 0.4427 MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAIQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRFRIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFDYPVSEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04778 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vimu11g04778 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vimu11g04778 191 Coils Coil 27 47 - -
Vimu11g04778 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vimu11g04778 191 Coils Coil 189 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04778 Vimu-Chr11 67918115 67919419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04778 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.105 1.77e-114 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04778 K02993 - gmx:100527680 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04778 11 67918115 67919419 Vimu11g04778 11 67918115 67919419 ECH