Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04776 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTACCGAAGATGACAATGAACTTAGAAGAGGGCCCTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTGACCACGGGGAAGGCCGATGGAACTTGCTGGCTAAACGTTCAGGATTGAAGAGAACTGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTGAAACGAGGAAATTTAACCCCACAAGAGCAACTTTTAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTATATATCTGTCTTGTGGTCAAAAATTGCACAGCATTTGCCCGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCCAGACATTTGAAAATTGAGACTGACAGCAGAGAATTTCAAGAACTTGTAAGGCGTTTTTGGATGCCAAGATTGCTTCAGAAGGTAAAAGAGTCATCGTCTTCTTCTTCGGCCATGTCAATTCAGAATCAGGCAATTCCTTTGGTTCATGATGATGGTGGTGTTTCTCAACAGTCAACTGTTGGGACCATACCATGGCAGGGAGCTTGCGTGAGTATGAATGGAGGTAGTCCCACTTATATGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAGTGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATTCCAAAAGTGTCTCATCATTTTGGAAACACCATGGACCAATTCAATTCCTTAAGCAACAATGACTTTGGCACTTACTCATATGATCCTTATCATGTAAATGACAATGCCTATGAGATGGAGACCTTCAAAACAGCAACTGCAAAGGTGGCTCAGGATGTGCAATACCCAATTGCTGACTGTCAAACGGCAGGAACCGATTGGCCAAGCAACGATTTTGCATGTACCATGTGGAACATCGATGAACTGTGGCAGTTTAGCAAGTTACAAAAATAA 966 0.4213 MSTSKSVSSSTEDDNELRRGPWTLEEDNLLSQYISDHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRYISVLWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIETDSREFQELVRRFWMPRLLQKVKESSSSSSAMSIQNQAIPLVHDDGGVSQQSTVGTIPWQGACVSMNGGSPTYMDQHEQNSDSEHNSGSCISFSESANIPKVSHHFGNTMDQFNSLSNNDFGTYSYDPYHVNDNAYEMETFKTATAKVAQDVQYPIADCQTAGTDWPSNDFACTMWNIDELWQFSKLQK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04776 321 SUPERFAMILY Homeodomain-like 17 118 IPR009057 -
Vimu11g04776 321 Gene3D - 75 123 - -
Vimu11g04776 321 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Vimu11g04776 321 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu11g04776 321 FunFam Myb transcription factor 19 71 - -
Vimu11g04776 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 126 IPR017930 -
Vimu11g04776 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Vimu11g04776 321 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vimu11g04776 321 Pfam Myb-like DNA-binding domain 72 120 IPR001005 -
Vimu11g04776 321 ProSiteProfiles Myb-like domain profile. 67 122 IPR001005 -
Vimu11g04776 321 CDD SANT 76 120 IPR001005 -
Vimu11g04776 321 SMART sant 18 68 IPR001005 -
Vimu11g04776 321 SMART sant 71 124 IPR001005 -
Vimu11g04776 321 MobiDBLite consensus disorder prediction 203 222 - -
Vimu11g04776 321 Gene3D - 19 71 - -
Vimu11g04776 321 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04776 Vimu-Chr11 67906655 67907987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04776 14 316 MYB Transcription Factor Family AT1G68320 44.654 3.31e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g04776 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04776 K09422 - gmx:778042 514.227