Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04775 ATGGCAGAATTCACTGCAGATTTGCAAAGCTTTAGACCCTCCTTTCCTTTCTTGGATATCGATAACATGGAAATTCAAAACTTGGTGCCCTTTGACAGCTTATTAGGCTCTACAGAACCTGAATTTCCAGGAAACTTGGAAGAGAATTTTCCGGGTCTTTTTCAATGCGTGGATCACAATGCAGTTCCAGCGTTAAATGAAGTTCATGAAGGTAAAAAGAGAGAAGCAACTGATATGGGTGATCCCAGTTCTGGTAACTCAACTCCTGATATTTCTGAGAGTGGAAGCAAGACAAAAAATATTTGTGGAAGAGGCAAGAGAGTGAAAAGGAATGCGGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTCAGAGCCAAAAGAGGTCAAGCTACAGACAGTCACAGTTTAGCAGAGAGGGTTAGAAGAGGAAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAATAATGTTGGACGAGATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCAATGAAGCTGAGTGCAGCAAGTAGCTATTACGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGAGAACAAAAGCATCCGAGGCGAAAGAGATAGGGAAGTATGTGAGAGAAGGAAGTGAAGGAGTTTCTTGCTTTGAAGCAACATGGCCATGGTACCTGTAA 732 0.418 MAEFTADLQSFRPSFPFLDIDNMEIQNLVPFDSLLGSTEPEFPGNLEENFPGLFQCVDHNAVPALNEVHEGKKREATDMGDPSSGNSTPDISESGSKTKNICGRGKRVKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASSYYDFNSESDALETMQRTKASEAKEIGKYVREGSEGVSCFEATWPWYL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04775 243 FunFam transcription factor BEE 3-like 127 198 - -
Vimu11g04775 243 CDD bHLH_AtBPE_like 121 205 - -
Vimu11g04775 243 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Vimu11g04775 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Vimu11g04775 243 SMART finulus 136 186 IPR011598 GO:0046983
Vimu11g04775 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 198 IPR036638 GO:0046983
Vimu11g04775 243 Gene3D - 127 199 IPR036638 GO:0046983
Vimu11g04775 243 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 80 208 IPR024097 GO:0006355
Vimu11g04775 243 MobiDBLite consensus disorder prediction 72 108 - -
Vimu11g04775 243 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04775 Vimu-Chr11 67895868 67897288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04775 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 48.148 2.10e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g04775 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04775 - - vun:114179606 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04775 11 67895868 67897288 Vimu11g04775 11 67895868 67897288 ECH