Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04771 ATGGAGGAAAACCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCTGACGTTAGCTTCACATCCAAGGTTGTTGCTGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCCTGAAAGATCGGAAATATCCGACAGGGCTTCGGACGAACCGTGCGACGGAATCAGGGTATTGGAAAACCACCGGAAAAGATAAGGAGATATTTGGCGGTGGAGTTTTGATAGGGATGAAGAAAACTTTGGTGTTTTACATGGGTAGAGCTCCAAGGGGTGAGAAAAGTAATTGGGTTATGCATGAATATAGACTTCAAAACAAGCAGCCCTATAGATCTTCTAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAGAAGAACTCAGCACCAAAGAAAGCACAGCAGACATCATCCTCTCAACCATCTCAAGAGTCTCCTATCTCAATGGCGAATGAATTTGGTGATGCAGACCTACCAAATCTGAATAGCATTGCAAATTCATCTAGTGTTGCAGCACAAATTTACAACAGTACTGGTGATCCCAGCAATGTTAGCACAAACATGAACTTGAACATGAATTGGCCTTCTGCAACTGAGCTTCCATCTCTTCCATGGCCTTCTGGGTTGATGCTGAATCCAAACCTTTCTGTCAATTCATTGCTTCTCAGGGCATTGCAGCTTAGGAGTACATATCAACAAAGAGAAGCTGCAACTGGTGATCATTTTGCAACGTACGTTCCTCAAACATTTCCTCACAATAATATTGGAACTGATAATCTCACTCCAAATCTCAGTGTCTCAGCTTCTTCCAGAGGTTTAGAACTGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 936 0.4295 MEENLPPGFRFHPTDEELITYYLLRKVSDVSFTSKVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKQPYRSSKEEWVICRVFQKNSAPKKAQQTSSSQPSQESPISMANEFGDADLPNLNSIANSSSVAAQIYNSTGDPSNVSTNMNLNMNWPSATELPSLPWPSGLMLNPNLSVNSLLLRALQLRSTYQQREAATGDHFATYVPQTFPHNNIGTDNLTPNLSVSASSRGLELQEQPFNMDSIW 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04771 311 MobiDBLite consensus disorder prediction 155 177 - -
Vimu11g04771 311 FunFam NAC domain-containing protein 100-like 14 155 - -
Vimu11g04771 311 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Vimu11g04771 311 MobiDBLite consensus disorder prediction 155 174 - -
Vimu11g04771 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 207 - -
Vimu11g04771 311 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Vimu11g04771 311 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vimu11g04771 311 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04771 Vimu-Chr11 67868292 67871258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04771 1 311 NAC Transcription Factor Family AT3G18400 56.798 6.32e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g04771 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04771 - - gmx:100775645 498.434