Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04752 ATGAATTTCCCTTCAGAAGCTACAGAATTGGGCAGCCCCATTGATAGTTCCTTTGAAAATGGGCGTTTTCAATCCCAGACTGTTGAGTTGGAAGCCAAAAATCGATTGCTTTTGGTTCAGTGGTTAACTAGCCTTATTCCTTCATTGAAATTTCCACCAAATGTCACGGATGGTGAATTAAGAGCATGCTTGAGTAATGGTACTGTTTTGTGCCAGATACTGAACAAGCTACGACCTGGTATTGTGAATGTGGTTAGTGAACCTGATAATGTTCTGCCATCACAATCAGAAAATGTTAAATCGTTTCTGAAAGTTTTGGATCTAATGGGATTGCTCCGGTTTGAAATATCAGACCTAGAAAAGGGGTCTATGAAAGCTGTTGTGGAATGTCTTTTAACACTCAGAAAAAAAAGTTTGCAGCATGCTTTTGGAGATAATCTTCCTAGTTCCATCACAGTCAGCCCTCGTGTGAATTCACCATTCCATCATCATCATTGTTCTACAACATTTGGTGGAGAGCAGAAGAAGTTTTCAATTTCGTCAAAGTTGCAGCGTGTTATGAGTTCCCCATCTATTCAGGAGCAATCAGCCTCATTAATACACCATGCTGGTCATAATTTCCATGAGGTGTTTCAACTGAAACCAGGAAGTTACATAGATCTTCCACCTGAAAAGATATCAGAAATGATGAAATCAAACAATATAGATAGTCTAATTTTGCAGAATGCTCCCACTCAGTCGCTTCTGAGTGTTGTGAACGGTATTCTTGAAGAAAGTGTTGAAAGAAGAAATGGGGAAATACCTCATCGTGTGGCTTGCTTATTGAGGAAGGTTGCGCAAGAGATTGAACGGCGCATGTCAACTCAAGCAGAACATTTACGAACTCAAAACAATCTTTTCAAGGCTCGAGAAGAAAAATACCAGTCCAGAATACGAGTACTCGAGACACTTGCATCAGAAACTAAAGATGAGAATGAGCGTGAGAGGATCAAAGAGGAAGAAAATAAGGTTGATGAGACAGAAGTTGGTAGGATGATAAAAGAGCAGCAGGACAAAATATTGGAAATTTCAGCTTTGAAGAGAGAACTGGAAACGGCCAAAAGAACATCTATAGTGCAATTCGCACGGTTGGAAGCAGAAGCTGAGGGTGCTAAAGCAGAACTGACACATATGGCTCAAGAATATAAACAACAAATAGAAGAAGCTGAAAATATGAAAGATGAATTAGTTAGGTTGATGAAAGAACAGGAGGACAAAAGAATGGAAATTTCAGCTTTGAAGAGCGAACTGGGAACAGCCAAAAGAACATATGAAGCACAATTCTCTCAACTTGAAGAAGAAGCAAAAGGTGCTAAGGCATGGACAGAAAAGGCCCAAGAATATGAATACCAATTGAAAGTATTACAAAATAAGGTTGAAAAGTTTCAAGAAGAGGTTAAGACAGCAAACGATGAGGAAATTGCTAGGTCGATGAAAGAACAGGAGTTCAAAAGTTCAGAAATTTCAGCTTTGAAGCAAGAGCTAGAAACAACTAAAATAGCATATGAAGTACAGCGGTCCCAGTTGGAAAAGGATGCCAAAGCAGAATTGGAACAAAAGTGTGAAGAATATGAGCATCAATTAACAGAGTTAAGACATAAGGTTAAGGAACTTGAGGTTTCTTCGGATTCAAAAGATCAGAAGTGGAACATGAAAATGAACCGATTTCTGACTGTCATAACATTTCAATTCAGTTCCCTACAGAAAATGAAGTTATCTTTGGAATCCACTAAGCAAAATGTAATAAAAGAGCAAACGGTTTATGCAGGGGAATTGGATCTATTAGGTGTAAAACTTAAACCACTTTTACACGCAGCTGAGAACTACCACGTTGTTATGGCTGAAAATAAAAAACTGTTCAATGAGATTCAAGAACTAAAAGGAAATATCAGAGTATATTGTCGAATTCGACCATCTGCATTAGGAAAATTGGAAAAAGAGTCTATTGTTGAACACGTTGGTGAAAATGATTTGGTTGTGGCAAATCCATCCAAAGAAGGAAAAGATACTCTTCGATCATTTAAATTTAACAGGGTTTTCAACCCTGCCGCAACTCAAGCGGAGGTATACTCCGACATCCAAGACTTCACTAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGTCAAACTGGTTCAGGGAAAACTTATACAATGACTGGTCCAAATGGGGCAACAAGCGAGACTATCGGTGTTAACTATCGAGCTCTAAATGACCTCTTCAGGATTTCCACAAGTAGACAAAATATAGTGGAGTATGAGATCGGAGTTCAAATGGTTGAGATATATAACGAGCAAGTCCTCCCAGATGCTAGCTTGTTCCCAGTGAAATTACCTTCAGATGTTATTAAGCTAATGGAAATTGGACTTAAAAATAGAGCCATTGCTGCAACTGCTATGAATGAACGAAGTAGCCGTTCTCACAGTGTTGTCTCAGTTCACGTTACCGGGAAGGACTTGAAGACTGGTTGCACTATGGCTGGTAATCTTCATTTGGTAGATTTGGCCGGAAGTGAAAGAGTAGATCGTTCTGAAGTAATTGGGGATAGGCTCAAGGAAGCACAGCATATAAACAAATCACTAGCTGCTCTTGGAGATGTTATTTTTTCCCTTTCTCAAAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAACTTCTACAAACTTCTCTTGGTGGTCAAGCAAAGACGCTCATGTTCGTCCAAATCAATTCAGACTTAAGTTCATATTCTGAAACTCTAAGCACTTTAAAGTTTGCTGAGAGGGTTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAACAAAGAGGGCAAAGACATTAGAGAAATGATGGAACAGGTGTCTTCTTTGAAGAGCTCTATTTTGGCAAAAGATGAGGAGATTGAGAGGCTTCAAGCCATGAAAGGTTTAGCTGGTAGCAGAGTTAAGCGAAATATAATTCCACGAAGTAGAAGCAGTATCCAGTTACAATCTACTAGCCCCCAACCAATTGATGATCATGCACAACAAAATGATTTTGTTGCAACTGCAGAAACATGTACAGATTCTGATTTTGACGGAAGATCAAGTGATTTCTCTGACGGTGGTGTTGCTGCAGGCACAGAAACTGATGGTTCTGAAAATTCCAGTCTCACTGAAGTCCCAAAACCACCATCAGAGAAGATGTCTAAAGGACTTCGCAGAACTGTTCAAGCTATGAGGAAATTTGGCCGAACTTCATCAAACACCATCCCCACAATCCCCACCATCCCCACCGCCCCAGTAAAGGAACCAGTGAAGAAGTCATCAGGTATTAAAAAAAGCATGAGTATAGGCACCCTTAAGCCTCCAAAACTGTGGAAGTAA 3399 0.3963 MNFPSEATELGSPIDSSFENGRFQSQTVELEAKNRLLLVQWLTSLIPSLKFPPNVTDGELRACLSNGTVLCQILNKLRPGIVNVVSEPDNVLPSQSENVKSFLKVLDLMGLLRFEISDLEKGSMKAVVECLLTLRKKSLQHAFGDNLPSSITVSPRVNSPFHHHHCSTTFGGEQKKFSISSKLQRVMSSPSIQEQSASLIHHAGHNFHEVFQLKPGSYIDLPPEKISEMMKSNNIDSLILQNAPTQSLLSVVNGILEESVERRNGEIPHRVACLLRKVAQEIERRMSTQAEHLRTQNNLFKAREEKYQSRIRVLETLASETKDENERERIKEEENKVDETEVGRMIKEQQDKILEISALKRELETAKRTSIVQFARLEAEAEGAKAELTHMAQEYKQQIEEAENMKDELVRLMKEQEDKRMEISALKSELGTAKRTYEAQFSQLEEEAKGAKAWTEKAQEYEYQLKVLQNKVEKFQEEVKTANDEEIARSMKEQEFKSSEISALKQELETTKIAYEVQRSQLEKDAKAELEQKCEEYEHQLTELRHKVKELEVSSDSKDQKWNMKMNRFLTVITFQFSSLQKMKLSLESTKQNVIKEQTVYAGELDLLGVKLKPLLHAAENYHVVMAENKKLFNEIQELKGNIRVYCRIRPSALGKLEKESIVEHVGENDLVVANPSKEGKDTLRSFKFNRVFNPAATQAEVYSDIQDFTRSVLDGYNVCIFAYGQTGSGKTYTMTGPNGATSETIGVNYRALNDLFRISTSRQNIVEYEIGVQMVEIYNEQVLPDASLFPVKLPSDVIKLMEIGLKNRAIAATAMNERSSRSHSVVSVHVTGKDLKTGCTMAGNLHLVDLAGSERVDRSEVIGDRLKEAQHINKSLAALGDVIFSLSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDLSSYSETLSTLKFAERVSGVELGAARSNKEGKDIREMMEQVSSLKSSILAKDEEIERLQAMKGLAGSRVKRNIIPRSRSSIQLQSTSPQPIDDHAQQNDFVATAETCTDSDFDGRSSDFSDGGVAAGTETDGSENSSLTEVPKPPSEKMSKGLRRTVQAMRKFGRTSSNTIPTIPTIPTAPVKEPVKKSSGIKKSMSIGTLKPPKLWK 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04752 1132 SMART kinesin_4 640 952 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 SMART ch_5 34 137 IPR001715 GO:0005515
Vimu11g04752 1132 Gene3D - 402 445 - -
Vimu11g04752 1132 Gene3D - 482 523 - -
Vimu11g04752 1132 Gene3D - 335 378 - -
Vimu11g04752 1132 MobiDBLite consensus disorder prediction 1032 1132 - -
Vimu11g04752 1132 Pfam Kinesin motor domain 788 942 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 584 784 - -
Vimu11g04752 1132 MobiDBLite consensus disorder prediction 1053 1067 - -
Vimu11g04752 1132 PANTHER KINESIN-LIKE PROTEIN KLP-3 415 1059 IPR027640 GO:0003777|GO:0007018
Vimu11g04752 1132 ProSiteProfiles Kinesin motor domain profile. 642 944 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 Gene3D Kinesin motor domain 785 985 IPR036961 -
Vimu11g04752 1132 Coils Coil 451 485 - -
Vimu11g04752 1132 Coils Coil 374 447 - -
Vimu11g04752 1132 Gene3D - 24 140 IPR036872 -
Vimu11g04752 1132 PRINTS Kinesin heavy chain signature 894 915 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 PRINTS Kinesin heavy chain signature 814 831 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 PRINTS Kinesin heavy chain signature 716 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 PRINTS Kinesin heavy chain signature 845 863 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu11g04752 1132 Gene3D Kinesin motor domain 588 784 IPR036961 -
Vimu11g04752 1132 MobiDBLite consensus disorder prediction 1085 1100 - -
Vimu11g04752 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 982 IPR027417 -
Vimu11g04752 1132 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 29 141 - -
Vimu11g04752 1132 Coils Coil 505 554 - -
Vimu11g04752 1132 Pfam Calponin homology (CH) domain 38 136 IPR001715 GO:0005515
Vimu11g04752 1132 Coils Coil 346 369 - -
Vimu11g04752 1132 FunFam Kinesin-related protein3 785 986 - -
Vimu11g04752 1132 SUPERFAMILY Calponin-homology domain, CH-domain 36 137 IPR036872 -
Vimu11g04752 1132 ProSiteProfiles Calponin homology (CH) domain profile. 32 139 IPR001715 GO:0005515
Vimu11g04752 1132 Pfam Microtubule binding 628 783 IPR031852 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04752 Vimu-Chr11 67688502 67695066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04752 630 944 Calmodulin-binding Proteins AT5G65930 40.173 2.58e-63 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04752 K10406 - aprc:113855795 1323.53