Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04751 ATGAGAGACATGAAAGATGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCGGCTGATAATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCGGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCCAAGGTAACCACCACCACCACACACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCCCTGGTTCCGGAGCTGGGAAGGGAAGAACAAGAACCCGTGGCTGTGGATAATGAAGAGACGGAGGAACAGATGCTATGCCGCGTGCCCGTGTTCGACAATTATGATGTGAGAACAGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACGATGAAGTAAGTGCGCGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACGAACGATGATGCCTTTCATTGGAATAGCATTGAGTCCGTGTTGTCAGATACACGGGAAAAGAAGGAGTGTGTGGTGGCGAGTGACGGTGCTGTTGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTTAACTACGATGAGGTTATAACTGCATGGTCTAGCCAAGGTTCTTCTCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGGCCATGACTTCTGCTTGGGTCTGAGTGGAGTAGATGGGGACGTAAGAGCCTTAAGGGGTGACCTAGACGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATTAGATATGAAGTGAGAAAGTTGAACGCAGAAAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTGGGGGCGAATGCTTTTCCTGCTTACCAATGA 1110 0.4811 MRDMKDAGALGAKTARACDSCISRRARWFCAADNAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKEEVLFNNSSVLPLVPELGREEQEPVAVDNEETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLDKEDDEVSARVGGGVQGAMAKVKDEEDIDGDVACYLESVFDMTNDDAFHWNSIESVLSDTREKKECVVASDGAVGEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSGHDFCLGLSGVDGDVRALRGDLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04751 369 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vimu11g04751 369 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Vimu11g04751 369 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vimu11g04751 369 CDD Bbox1_BBX-like 17 60 - -
Vimu11g04751 369 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 357 - -
Vimu11g04751 369 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
Vimu11g04751 369 Pfam CCT motif 314 356 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04751 Vimu-Chr11 67683684 67685055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04751 7 356 C2C2-CO-like Transcription Factor Family AT1G25440 43.326 2.84e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu11g04751 zf-B_box 5.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04751 - - vun:114176987 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04751 11 67683684 67685055 Vimu8g01514 8 21086228 21088660 PCT