Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04730 ATGCGTGTGGAAGAGGCTGTTGAATCGCGATGTGTGAGGCTTTATACAGCACTCTTCACTTCGGTTAGTCAATTGGATGCTATAGCTGAGTGGAGCTGCTCTAGAACCCTACAGGACTCAAATAGTAGGGCCGTTTTCAATAGGGGCCAAAATATTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAACAGTTCCTAAAATGTGGTGTGAAGAAGGAACTTCTTCGAACGTGTTTTGATAAGGACAAAAAAAACATTTCAATTAAAAGCAGGATGACTGAAACTAAGTCAACTGGGAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCACCAGCCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGACTCATACCTCCTTCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAGAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTCGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGGGCTACAGGCTCCTGGATGGAACCACAAAATTCAAAGACTTGCATCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTATGAATGGCGTTTCTGCCAAGATGGCTAGAGGCATTGTCAGCAGACTCCCTATTGCCAATGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGCTGGCTTGCCACTGTTCACAATGTAAATTCAGATTCTACAGGGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCCGTGAAAATCATTTTAATTGAATTATCAAATATATGTCCTGAGGAGATTAAGGGATACAAGCTTTGGTATTACACGAGTCGGGATGAATCACCCACCAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACAGATACACGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAACAATCCCTCTCCATCTGTCGCTATGAATCATGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCCAAGATGGTGCCAAATGACGCAATGGGCAACCATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTATTTGGAAGAGTTTTGTTGTGTCAATACGAAAAATTGCTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGATGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGGGACGATGATGCAGCTTCTCATGATCTAGAGAAAAATGGTTTAGCTAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAGCAGGAGAAGTATCTGCTGTTGATTCACGCTTAGATATGTGCAGAAAAAGGATGGCAAGCGCAATGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCATTACGCATATGTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATTAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGAAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCAGGGCAACTGGTAGACTCTTTTTCTGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAACAGGTTTGTCTTGCTCAAAGGATTTGCAATGATGGTTGCAGAAACAGTAACTCATTTTTCCCAGGAGGGAGGATTTATGGACACGAAGTTTCAGGATGTAGGGGCATTCATTTCTAAATTGCTGCAATTGATTTTGGGGTACTATGATTTTGATAAATGTTTTATCAAAGCATGCGTCTGCACTCGTGCAATTGAAAAGCCGCAGAGTAACTTCTCTGTTGGAAGTGTGGAAAGGTATCAAATTTGTGATGCAACACCTAGCGTTGTGAACTTCGCTTAG 2544 0.421 MRVEEAVESRCVRLYTALFTSVSQLDAIAEWSCSRTLQDSNSRAVFNRGQNISGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGVKKELLRTCFDKDKKNISIKSRMTETKSTGKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRLIPPSDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLGYRLLDGTTKFKDLHQTVQEAKAKLETEVGPMNGVSAKMARGIVSRLPIANDIQKLCSLAIEKADSWLATVHNVNSDSTGGSLPAACKFVFEEVTTSSVKIILIELSNICPEEIKGYKLWYYTSRDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEVIKNNPSPSVAMNHEKENLLSRGNSSGSKMVPNDAMGNHGFKVRDLGKILRLAWAQEQGYLEEFCCVNTKNCCGQSERLDKPRIPDAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPAGEVSAVDSRLDMCRKRMASAMEETHDCDSTLINGSPLRICDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRQKNGFNRFVLLKGFAMMVAETVTHFSQEGGFMDTKFQDVGAFISKLLQLILGYYDFDKCFIKACVCTRAIEKPQSNFSVGSVERYQICDATPSVVNFA 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04730 847 PANTHER VIN3-LIKE PROTEIN 2-RELATED 58 755 IPR044514 GO:0010048|GO:0040029
Vimu11g04730 847 MobiDBLite consensus disorder prediction 110 160 - -
Vimu11g04730 847 Pfam PHD - plant homeodomain finger protein 169 287 IPR032881 -
Vimu11g04730 847 Pfam Fibronectin type III domain 374 450 IPR003961 GO:0005515
Vimu11g04730 847 MobiDBLite consensus disorder prediction 610 630 - -
Vimu11g04730 847 SUPERFAMILY Fibronectin type III 374 450 IPR036116 GO:0005515
Vimu11g04730 847 ProSiteProfiles Fibronectin type-III domain profile. 368 467 IPR003961 GO:0005515
Vimu11g04730 847 MobiDBLite consensus disorder prediction 56 77 - -
Vimu11g04730 847 CDD FN3 398 449 IPR003961 GO:0005515
Vimu11g04730 847 MobiDBLite consensus disorder prediction 110 130 - -
Vimu11g04730 847 Gene3D Immunoglobulins 355 458 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04730 Vimu-Chr11 67563686 67572873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04730 165 753 PHD Gene Family AT3G24440 48.680 1.45e-177 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04730 - - gmx:100816128 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04730 11 67563686 67572873 Vimu11g04730 11 67563686 67572873 ECH
Vimu11g04730 11 67563686 67572873 Vimu8g01462 8 20743773 20752488 PCT