Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04721 ATGAAGAAGAAACAAGGACACTCCTTTAATCTAAGACTCCTCCTCCTCCTTGGCTTCTTTCTGGTCACATGTGCCAATGCCTCCCTTCTCACGCCAACCCAATCGCGCCATCTTCTCTACTACACAGACGAGTTTGGAGATAGAGGCGAGAATGTCACCGTAGACCCTTCCCTTGCTTTCGAAAATGACCGTCTCAGAAACGCTTACATAGCTCTGCAAGCTTGGAAGCTCGCCATTTTATCTGATCCCCGCAACCAGACAACCGACTGGGTAGGATCCGACGTTTGTAGCTACACCGGTGTATACTGTGCTCAAGCGCTCGACAACCCCTCCCTCCGTACAGTCGCCGGCATTGATCTCAACCATCAGGACATTGCCGGCTATTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTCTTCCACATCAACTCCAACAGATTCTGTGGCACTGTGCCCCACACGTTCCGGAAGTTGGTACTCCTCTACGAGCTGGATCTCAGTAACAACCGCTTTGCGGGGAGGTTCCCTGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTTAGGTTCAACGAATTCGAAGGAGCTGTGCCCAGGGAATTGTTCGACAAAGATCTCGACGCCATTTTCATCAACGACAACCGTTTCGTCTTTGACCTTCCAGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGATTCCACGGCTGCATTCCCCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAATCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTCGGCCCCTTACCAAGCGCCGTAGGAAATGCCGTCAGCTTGGAACAGCTCAACGTGGCCCACAACTTACTCTCCGGTCAAATTCCTCCCAGTATATGTATGTTGCCTCACCTTCTCAACTTCACTTACTCCTTTAACTTCTTCACCGGCGAGCCTCCTGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGATCAACTGCTTGCCGGCGAGGCCCGTTCAGAGGCCTCCGGCGCAATGCCAGGCTTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAACTGCAAGCCATTTGTTCCTTCACCTCTTTCCCCCACAACACCTGCAACTCCTTCACCACCATCTCCTGGGACACCTTCGCCTCCATCAACTGGGACACCTTCACCAGTAACTCCTTCGCCTTCATCACCTGGGACACCTTCACCTGTAACTCCTTCACCACCATCTCCTGGGACACCTTCACCTATAACTCCTTCGCCTCCATCACCAGGCACACCTTCACCTGTAACTCCTTCCCCACCATCTCCTGGGACACCTTCACCTGTAACTCCTTCGCCTCCATCTCCTGGAACACGTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCTGTAACTCCTTCGCCACCATCTCCTGGGTCACCCTCGCCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCCGTAAATCCTTCGCCGTTACCTTCACCTACAACACCTTCGCCTCCTTCACCTGCCGCACCTTCCCCACTACCTACACCTCCTTCGGAACCACCGGTGGTGGGACATTCCCCTCCACCCCGGCCAGTGGCACCTTCTCCACTACCACCCATTCACACTCCTCCTTCACCGGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGGATACTCTTCACAACCTCCTCCACCTTCGCAATTGCCGCCTCCATCATACACTCCGCCTTCTCCAGTGACACCTTTTCCTACTCCAACGCCACCCAATGGTGTTCACTCTCCACCGCCACCGGCTCCTACATTCTCGACACCACCACCTTCACATAATTATGGCTCATCGCCACCTCCTACACCTCATCACTCACCATCACCTCATCCTTACCCTTATTTATCACCCCCACCACCTCCTTATCCTGTTCGTGTTCCACCTCCACCACCACCTTGTACAGAACTTCTTCCACCCCCTCCACAATCAACACCTTCTCCCACACCTTACCTCCCACCACCATCCCCATCTCACCCACCTTATCACCCATCACCATCCCCTTCTCACCCATCACCTTATCACCCGCCACCATCCCTTTCTCCCTCTCCAACTCCACCGGTTCAATACAGTTCGCCTCCCCCGCCGCCTCCTCCACCAGCAGTTTCTCCACCGCCACCTGTTGTATGCCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATCGTGGGACTCCCATACGCATCGCCTCCGCCACCACCCTTTTATTGA 2376 0.5438 MKKKQGHSFNLRLLLLLGFFLVTCANASLLTPTQSRHLLYYTDEFGDRGENVTVDPSLAFENDRLRNAYIALQAWKLAILSDPRNQTTDWVGSDVCSYTGVYCAQALDNPSLRTVAGIDLNHQDIAGYLPEELGLLVDLALFHINSNRFCGTVPHTFRKLVLLYELDLSNNRFAGRFPEVVLRLPSLKFLDLRFNEFEGAVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPHSLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPSAVGNAVSLEQLNVAHNLLSGQIPPSICMLPHLLNFTYSFNFFTGEPPACLALPAFDDRINCLPARPVQRPPAQCQAFLSKPVDCNSFNCKPFVPSPLSPTTPATPSPPSPGTPSPPSTGTPSPVTPSPSSPGTPSPVTPSPPSPGTPSPITPSPPSPGTPSPVTPSPPSPGTPSPVTPSPPSPGTRSPGTPSPPSPGTPSPVTPSPPSPGSPSPVTPSPPSPGTPSPVNPSPLPSPTTPSPPSPAAPSPLPTPPSEPPVVGHSPPPRPVAPSPLPPIHTPPSPVYLPPPHSSPAPPGYSSQPPPPSQLPPPSYTPPSPVTPFPTPTPPNGVHSPPPPAPTFSTPPPSHNYGSSPPPTPHHSPSPHPYPYLSPPPPPYPVRVPPPPPPCTELLPPPPQSTPSPTPYLPPPSPSHPPYHPSPSPSHPSPYHPPPSLSPSPTPPVQYSSPPPPPPPPAVSPPPPVVCQNPPPAPVYEGPLPPIVGLPYASPPPPPFY 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04721 791 FunFam Leucine-rich repeat extensin-like protein 5 231 370 - -
Vimu11g04721 791 Gene3D Ribonuclease Inhibitor 68 353 IPR032675 -
Vimu11g04721 791 MobiDBLite consensus disorder prediction 394 791 - -
Vimu11g04721 791 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 522 - -
Vimu11g04721 791 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Vimu11g04721 791 PRINTS Proline rich extensin signature 428 445 - -
Vimu11g04721 791 PRINTS Proline rich extensin signature 446 471 - -
Vimu11g04721 791 PRINTS Proline rich extensin signature 407 423 - -
Vimu11g04721 791 PRINTS Proline rich extensin signature 384 405 - -
Vimu11g04721 791 FunFam Leucine-rich repeat extensin-like protein 1 69 230 - -
Vimu11g04721 791 SUPERFAMILY L domain-like 78 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04721 Vimu-Chr11 67486336 67490369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04721 33 393 Leucine-rich Repeat extension Gene Families AT3G24480 75.414 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04721 - - vum:124830001 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04721 11 67486336 67490369 Vimu11g04721 11 67486336 67490369 ECH