Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04720 ATGAGTGCTCTCTCTGTTTCCAGTGACAACCACAACAACTCCTTCCCCAAGATGCCCACCGTCAAGTTTACCAAGCTCTTCATCAATGGACATTTTGTTGATTCCATATCAGGGAGGACATTTGAGACTATAGATCCGAGAACAGAAGAGGTAATTGCAAGAGTGAGTGAGGGAGACAGAGAAGACATTGATGTAGCTGTTGCAGCAGCACGTGAAGCGTTTGACCGAGGTCCATGGCCTCGCATGGCTGCCTCTGAGAGGGCAAAAATAATGATCAAATGGGCCGACCTAATTGACGAAAACATAGAAGAAGCAGCAGCTTTAGATAGCATGGATGCTGGAAAGTTGTACTATTTCAACAAGTTTGCCGAAATTCCATCAGCAGCAAATGCTCTACGTTACTATGCAGGAGCTGCTGATAAAATTCATGGCCAAGTACTAAAAGTGAACGGAAATTTCCATGCATATACACTGATGGAACCGATTGGTGTTGTGGGACACATAATTCCCTGGAATGCACCCAGTCACTCATTTTTCATCAAGGTTAGCCCTTCCTTGGCAGCAGGCTGCACCATGGTCCTCAAGCCTGCCGAACAAACACCTCTCTCTGCTTTGTTCTACGCTCATCTTGCTAAGCTCGCTGGAATCCCAGATGGAGTGCTGAATGTAGTACCCGGATTTGGCGCAACTGCTGGTGCAGCAATAAGCTCGCACATGGAAATTGATGCGGTCAGTTTTACTGGTTCAGTTGAAGTAGGGCGTGAAGTGATGCAAGCTGCAGCTAGGAGCAATTTAAAACCAGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGCTGATATAGACCAGGCAGTGGAGCTTGCAATCATGGGCATCATGTTTAACAAGGGAGAAGTTTGTGTGGGTAGTTCTCGTGTGTATGTCCAGGAAGGGATCTATGATGAATTTGAAAAGAAATTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCTTTTGATCCCAAATCGCAGCAAGGGCCTCAAGCTAGCAAGGACCAATTCAAGAAAATACTTTCCTATATTGAACATGGAAAGAAAGAGGGTGCAAAACTTTTGACCGGAGGTAACAGAGTCGGCGACAAAGGTTGCTACATTGAACCCGCAATTTTCTCCAACGTAAAGGAGGACATGGTTATAGCACAAGAGGAAATATTTGGCCCTGTAATGGCATTGATGAAATTTAAGACAATAGAGGAAGCAATTAAAAGTGCGAACAATACGAAGTTCGGTTTAGCAGCAGGCATTATGACAAACAATTTGGATACATCAAACACAATGTCAAGATCTATTCGTGCAGGTATTGTTTGGATCAACTGCTATTTCATTGTGGGGAGTGAAGTTCCTTTTGGAGGGTACAAGATGAGTGGATTTGGAAGAGATTTGGGCATGGAGGCCCTTCATAAATACTTGCAAATTAAATCTGTTGTTACACCTATTCACAATTCTCCTTGGCTTTGA 1515 0.4409 MSALSVSSDNHNNSFPKMPTVKFTKLFINGHFVDSISGRTFETIDPRTEEVIARVSEGDREDIDVAVAAAREAFDRGPWPRMAASERAKIMIKWADLIDENIEEAAALDSMDAGKLYYFNKFAEIPSAANALRYYAGAADKIHGQVLKVNGNFHAYTLMEPIGVVGHIIPWNAPSHSFFIKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGATAGAAISSHMEIDAVSFTGSVEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDQAVELAIMGIMFNKGEVCVGSSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPKSQQGPQASKDQFKKILSYIEHGKKEGAKLLTGGNRVGDKGCYIEPAIFSNVKEDMVIAQEEIFGPVMALMKFKTIEEAIKSANNTKFGLAAGIMTNNLDTSNTMSRSIRAGIVWINCYFIVGSEVPFGGYKMSGFGRDLGMEALHKYLQIKSVVTPIHNSPWL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04720 504 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 28 295 - -
Vimu11g04720 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 28 492 IPR016162 GO:0016491
Vimu11g04720 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 274 463 IPR016163 GO:0016620
Vimu11g04720 504 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 12 494 - -
Vimu11g04720 504 FunFam Aldehyde dehydrogenase3 274 463 - -
Vimu11g04720 504 SUPERFAMILY ALDH-like 17 499 IPR016161 GO:0016491
Vimu11g04720 504 FunFam Aldehyde dehydrogenase, putative 466 492 - -
Vimu11g04720 504 Pfam Aldehyde dehydrogenase family 33 494 IPR015590 GO:0016491
Vimu11g04720 504 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 270 277 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04720 Vimu-Chr11 67477378 67479930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04720 17 504 Aldehyde Dehydrogenase Gene Family AT3G24503 67.894 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04720 K12355 - gmx:100527654 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04720 11 67477378 67479930 Vimu8g01448 8 20606798 20611413 PCT