Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04706 ATGACTTCTCTCTCCGTCTTTCCCTCACTCCCATCGCTTCAAAACCCTAACTTCACGCATCCCCGCCTCTCCGATTTCATCTATTTCCCTTTCAATTCCACGCAATCTTTTGCACCACTCTCTCGCCGTAATTTCCTATGCAGAGCTTTCAGAGATCCCGGCGAGGATATCAAAGCGGTTGTCAAGACCGACGACGACGGCGGCGGAGATGGGGGTGGAGACGGTGGGGGGGACCGGGACTCGGAGAAAAAAGAAGGGCCTTTGCCGGAGTGGTTGAATTTCACTACTGATGACGCCAAAACGGTACTTGCTGCTATCGCAATTTCGCTTGCGTTTCGCACGTTCGTGGCGGAGCCTAGGTACATTCCCTCGTTGTCAATGTACCCTACATTTGATGTTGGCGATAGAATTGTTGCTGAAAAGTGTTTGTATGCCAAGAACTGTAGGTTAGATTCATCTTCATCTGACAACTTCAGCTATTTGTTGGAATATGATAAGAATTTGGTGCTTTTCTATAATGTGTGGGGTGTCTGTAAGGTTTCTTACTATTTTAGAAAACCATGTGCAAGTGACATTGTGATATTCAAAAGCCCTCCTGTGCTCCAAGAAGTTGGATATAGCGATGACGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGCTTAGTCTGAAATGTGAGCAATTGAATTATTTGCAGGTCCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGACTACATTCATGAACCACCTGCATATGAGATGAAACCCACACGTGTACCAGAGAATTACGTGTTTGTGATGGGAGACAATCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTGCCATCCAAGAACATTATAGGGAGATCAGTATTTCGATATTGGCCACCAAATAGAATTGCTGGCACAATTTCTAAGGATAGCTGCAGTGTTGAAACCACGCAGGAGAATGCAGAGACTGCTCTACCTTCTCAATGA 1011 0.455 MTSLSVFPSLPSLQNPNFTHPRLSDFIYFPFNSTQSFAPLSRRNFLCRAFRDPGEDIKAVVKTDDDGGGDGGGDGGGDRDSEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKCLYAKNCRLDSSSSDNFSYLLEYDKNLVLFYNVWGVCKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVELSLKCEQLNYLQVRKGHLVVNGVERNEDYIHEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTISKDSCSVETTQENAETALPSQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04706 336 CDD S26_SPase_I 118 300 IPR019533 GO:0004252|GO:0006465
Vimu11g04706 336 FunFam Peptidase/ serine-type peptidase 176 305 - -
Vimu11g04706 336 MobiDBLite consensus disorder prediction 59 89 - -
Vimu11g04706 336 ProSitePatterns Signal peptidases I signature 3. 273 286 IPR019758 GO:0004252|GO:0016020
Vimu11g04706 336 NCBIfam signal peptidase I 100 308 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu11g04706 336 SUPERFAMILY LexA/Signal peptidase 113 312 IPR036286 -
Vimu11g04706 336 Pfam Signal peptidase, peptidase S26 99 306 IPR019533 GO:0004252|GO:0006465
Vimu11g04706 336 Gene3D Umud Fragment, subunit A 112 319 - -
Vimu11g04706 336 PANTHER SIGNAL PEPTIDASE I 87 312 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu11g04706 336 ProSitePatterns Signal peptidases I serine active site. 124 131 IPR019756 GO:0004252|GO:0016020
Vimu11g04706 336 MobiDBLite consensus disorder prediction 59 87 - -
Vimu11g04706 336 PRINTS Bacterial leader peptidase 1 (S26A) family signature 212 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu11g04706 336 PRINTS Bacterial leader peptidase 1 (S26A) family signature 268 287 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu11g04706 336 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04706 Vimu-Chr11 67373234 67375814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04706 173 307 MADS-box Gene Family AT1G29960 28.148 4.36e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04706 K03100 - gmx:100815810 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04706 11 67373234 67375814 Vimu11g04706 11 67373234 67375814 ECH