Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04696 GAAGGTGAGGGGAGTGATTGTGCTCCCAAGAATGTTGTGCCCAACGACGTCGTCGCGAATGCGCTTTTGCCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGACAGCTCGATTTCACTGGTTTCGGTGGGATGCCACCGCAGTCGCCGGTGGTTTTGCCGCTGCCGCCTTCTGCTTCCGTCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAAGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCGTCACCACCAATATCAAAGAAAAGAAAAGGCCAAGAACTCTTATTTGGGTCAACCATCAAAGATCCGTCACTTGGAAGGCTGGGACAACAGGTGAAATTTGTTAATAATGTTTAA 561 0.4706 EGEGSDCAPKNVVPNDVVANALLPSDVPAKKLARQLDFTGFGGMPPQSPVVLPLPPSASVREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGSTIKDPSLGRLGQQVKFVNNV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04696 186 SMART CXC_2 72 113 IPR033467 -
Vimu11g04696 186 PANTHER TESMIN/TSO1-RELATED 68 145 IPR028307 -
Vimu11g04696 186 ProSiteProfiles CRC domain profile. 1 112 IPR005172 -
Vimu11g04696 186 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 75 109 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04696 Vimu-Chr11 67309710 67311932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04696 61 172 CPP Transcription Factor Family AT4G29000 78.571 1.92e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu11g04696 TCR 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04696 - - gmx:100777327 239.195