Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04688 GATCATAGCAAAATCAAGAAAGCCATGAATAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCTGCAAACCCTAACAATTGGTGGAACATCAACACCATGCGTCCTCCTCCGCCTTCTCCTCCTCCTCCTTCTCAGCCTTCTTCTCCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCGTATAACACCTCTTCTTCTCTTCCTCTTCCTTCTTGGCATGATAACAATCAAGAACTACCTGAGTCATGGAGCCAGCTTCTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGCTATGTGCCAGGTTCAGCAACAAATGCTGAGTCAGGTTAAGCAAGAAGGGTCGGTGAACAGCTACGTGTACGGTCATGGAAACGAAGAGTTTCACCCAGCAAAGCCAACTTGGCCTCAAATAGTGCCTTCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTAGATTTCTCTAACAGTAACACAGATGCTAGGCCTCCTCCTCCAGACCCATCATCAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGTCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCGTTTGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAATGGATCAGGAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGTTTGAAGAGGAAAGCAACTAGTGAGCAGGATTCTGAAGAAGAGGCGAAGAAGGATCTAAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGGGGGTTTCGGTAG 1026 0.4717 DHSKIKKAMNRGVLQSSPVQQMMAANPNNWWNINTMRPPPPSPPPPSQPSSPFFSTPSNFLTPYNTSSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGAMCQVQQQMLSQVKQEGSVNSYVYGHGNEEFHPAKPTWPQIVPSSSPKSCVTSFSSSMLDFSNSNTDARPPPPDPSSECNSTAAGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSGNMRQQQSVQGEKNCIFPEDPGQLLNENCLKRKATSEQDSEEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04688 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 254 IPR036638 GO:0046983
Vimu11g04688 341 Coils Coil 290 310 - -
Vimu11g04688 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Vimu11g04688 341 MobiDBLite consensus disorder prediction 34 52 - -
Vimu11g04688 341 FunFam transcription factor bHLH68 isoform X1 201 254 - -
Vimu11g04688 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 70 323 - -
Vimu11g04688 341 MobiDBLite consensus disorder prediction 161 200 - -
Vimu11g04688 341 Gene3D - 201 255 IPR036638 GO:0046983
Vimu11g04688 341 MobiDBLite consensus disorder prediction 29 58 - -
Vimu11g04688 341 CDD bHLH_AtbHLH_like 202 251 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04688 Vimu-Chr11 67266304 67269066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04688 9 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.175 1.06e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04688 - - gmx:100785156 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04688 11 67266304 67269066 Vimu11g04688 11 67266304 67269066 ECH
Vimu11g04688 11 67266304 67269066 Vimu8g01384 8 20224789 20228136 PCT