Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04685 ATGAAAGGAGGGTGCGAAGAAGGGTTGAACCTGAGGGCCACTGAGCTAAGGCTTGGGTTGCCAGGGCTTGAGTCACCTGAGAGGGAGGACGTGTTTAAGACTGTGGTGGTGTCTGGGGCCAAGAGGGGCTTCTCTGATGCCATTGATGGAGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGTTGTCTTGTTCTCTCCCAGGGGAACTGTTAGTGCTGCCAAGTCTCTCACCCTCACTGCAACAGACTGCACCAACCAGCCAACTGTTTTGAGTGCTTCTGTTCTTAAAGAAACTGTTCCACACTCTCCAAAACCTCTGCATGAGAAGAAACCTCAGATTTCTGCTCCAGCTGCCAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTCAGCCTCAGAAGAATGAAGATGCTGAGGCAGAAGGCAAGTCTGAATGTCTTTATGTTAAAGTGAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTCTCTTTGGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTTCTAGTCGAGAAAAATTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTTCTTACATATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAATCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGGGCGGTGGAAAAGTGCAAAAGTCGCAACTAA 843 0.4638 MKGGCEEGLNLRATELRLGLPGLESPEREDVFKTVVVSGAKRGFSDAIDGGSGNWNGGSEVGLGKDVVLFSPRGTVSAAKSLTLTATDCTNQPTVLSASVLKETVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMAQPQKNEDAEAEGKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGVSSSREKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04685 280 FunFam Auxin-responsive protein 154 272 - -
Vimu11g04685 280 SUPERFAMILY CAD & PB1 domains 155 261 - -
Vimu11g04685 280 Gene3D - 153 274 - -
Vimu11g04685 280 Pfam AUX/IAA family 14 271 IPR033389 -
Vimu11g04685 280 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 267 IPR003311 GO:0005634|GO:0006355
Vimu11g04685 280 ProSiteProfiles PB1 domain profile. 159 262 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04685 Vimu-Chr11 67228495 67230268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04685 162 270 B3 DNA Binding Superfamily AT4G23980 32.110 7.52e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu11g04685 AUX_IAA 5.5e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04685 K14484 - gmx:100778529 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04685 11 67228495 67230268 Vimu8g01383 8 20196428 20199476 PCT