Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04680 ATGGAACGCATCGTTGGCCGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGACACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGAAAAACGAAGCATCCGCAACTTCTTTACGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGAATTCCGAACATAGAATGGTCTGGCGTAGACGGGGAGGAAAATGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAAGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGGATAGAATATGTGCATTCTAAAGGATTTCTGCATAGGGATATTAAACCCGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATACCGGGAATCGGGTACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACCGGCACAGCCCGATATGCAAGTTGTAATACTCATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAATCTCTAGGATATGTACTTTTGTATTACCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACGAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAAGTTTCAACTCCTATTGAGGTACTTTGCAAAACTCATCCAGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCGTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACCTATTTTCTCGAGAAGGCTATGAATTTGATTACGTTTTTGATTGGACCATTTTAAAGTACCAGCAATCTCAAAAGAGTGCAGTGCTCCCTCCACTATCTCCAGTTCCAGGAGCAAGTAACAGTCGAGCAATTCCAATGGATATTGACCATCATCAAGGGCATGTTATGGAGCAGAATAGAGCAGGCGATGCTGCTGGTTCTGGTGTTAAAATCCAGTTTAAATCACCAGGGGGTAAAAATGTGAGCTATGAGAATCCACTTGAGAAAAATATTTATGGAGAAGCAAATATACCCGCTGCTTCATACTCTCCTGCTAGTACTTCTATAAGGAACTCCTTGAAGCTATCTTTGTCTGCTGAAGCTTCCAACCCTGGACACGGGCAAGGCAGTAAAATTGGCCCTTCAAGTAGCTTGATGTCATCTCTGCAGCACATGTCTTCTTCTAAATGA 1275 0.4345 MERIVGRKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENRKTKHPQLLYEAKLYNILQGGSGIPNIEWSGVDGEENVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESGTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYYLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKTHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFSREGYEFDYVFDWTILKYQQSQKSAVLPPLSPVPGASNSRAIPMDIDHHQGHVMEQNRAGDAAGSGVKIQFKSPGGKNVSYENPLEKNIYGEANIPAASYSPASTSIRNSLKLSLSAEASNPGHGQGSKIGPSSSLMSSLQHMSSSK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04680 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vimu11g04680 424 MobiDBLite consensus disorder prediction 394 424 - -
Vimu11g04680 424 FunFam Casein kinase I isoform delta-like 1 339 - -
Vimu11g04680 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04680 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04680 424 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Vimu11g04680 424 PANTHER CASEIN KINASE-RELATED 8 338 - -
Vimu11g04680 424 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04680 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu11g04680 424 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04680 Vimu-Chr11 67197652 67201106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04680 5 215 EF-hand Containing Proteins AT4G23650 29.954 1.81e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu11g04680 Pkinase 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04680 K08960 - gmx:100779936 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04680 11 67197652 67201106 Vimu11g04680 11 67197652 67201106 ECH
Vimu11g04680 11 67197652 67201106 Vimu8g01365 8 20099613 20102884 PCT