Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04671 ATGACTGAGCTACCTGGCTCAGAATCATCCTCCTCTGCTTCCACTCGCAAGCACTCGTCTCCAGAGGCCCATTTGCCACGACCGGATCACAAAAAGCCCAAACAGGCCCGAGATACCAGCAGCAAGCACCCCGTTTACAGAGGGGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCCGAAATCCGCGAGCCAAGGAAAAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCCCACGACGTTGCCGCGCTTGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAGCTCGCCGGCTCCCTGCCGCGGCCGGACTCGAACTCGCCGCGGGATGTTCAGGTGGCGGCGGCAAAGGCCGCCGCCATGGAGGTGATGGATCCCCCGACGACTCCATCGTGGACGCTGTCGCAGTCGTCTTCGTCATCCTCGTTGGCGGTGAGTTCGTCCTCGGGCGAGACGTCGACGGCGGATGAGCTGGGAGAGATAGTGGAGCTGCCGAGTCTGGGGACGAGTTTGGAAATACCGGAACGGAGTGAGGAGGTGGTGTTCGTGGAGCCGGTGGACGGGTGGCTGTATTCTGAGGCGTGGTGTGACGGCATTTATGGTGAGAGGGAGTGTGGGGGTTATTTTATTGGAGATGAGATTTCAATGCAGGAGTCAGAGAGCATGATTCTTTGTGGCTTTGAGGGTTCCTTGTGGCAGCATTAA 729 0.5995 MTELPGSESSSSASTRKHSSPEAHLPRPDHKKPKQARDTSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAGSLPRPDSNSPRDVQVAAAKAAAMEVMDPPTTPSWTLSQSSSSSSLAVSSSSGETSTADELGEIVELPSLGTSLEIPERSEEVVFVEPVDGWLYSEAWCDGIYGERECGGYFIGDEISMQESESMILCGFEGSLWQH 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04671 242 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vimu11g04671 242 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vimu11g04671 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 178 - -
Vimu11g04671 242 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g04671 242 MobiDBLite consensus disorder prediction 20 45 - -
Vimu11g04671 242 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vimu11g04671 242 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vimu11g04671 242 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vimu11g04671 242 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Vimu11g04671 242 MobiDBLite consensus disorder prediction 1 19 - -
Vimu11g04671 242 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Vimu11g04671 242 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vimu11g04671 242 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04671 Vimu-Chr11 67131362 67133588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04671 29 208 AP2-EREBP Transcription Factor Family AT5G25810 59.116 8.76e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g04671 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04671 K09286 - gmx:100778201 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04671 11 67131362 67133588 Vimu11g04671 11 67131362 67133588 ECH
Vimu11g04671 11 67131362 67133588 Vimu8g01356 8 20045052 20047128 PCT