Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04665 ATGATTTCGTTGAACACTGCCAATTTAATGGGACACGGGTGCTCAAAAAACTTAGGAATTTCTGGCTGGTGTGGCGGTGATAAGAGGAAAATATCAGAGAAAGTTGTGTTGCGTGTGAACTCAAAGGTTCGTGAACATAATAATATCCATAACACTGGTAAAGAAGAAGAGGGAGAAGAGAAGAAAGTGATTGGTAGGAAGATGGAGAGCGTACTGAAGCCACTGAGAGATGGAGAGTCAGTGTTGGACCTCAGCCCCAGATCCACCGTCAGCGGTGGCGTTGAGGATGTCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTCACCCCATGGACTATCTCAGTTGCCAGTGGTTGGTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCAGTGAGAAAGAGAGGGATGCACACTATTTGCGTGGACTTCTACCTCCCACTGTCCTCACTCAGTTACTTCAGGAGAAGAAACTGATGCACAACATCAGGCAATATAAGGTTCCCTTGCAAAAGTACGTGGCCATGATGGAACTTCAGGCAAGAATTTCAACATTTTGTTGTTGCATACAGGAGAGGAATGAAAGGCTGTTTTACAAACTACTCATTGACAATGTTGAGGAATTGCTCCCAGTTGTATATACTCCTACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTTTAAAAGAAAGGGGTAAAGTCCTCGAGGTTTTGAAAAACTGGCCTGAGAGGAATATTCAAGTTATTGTTGTAACTGATGGTGAGCGAATTTTGGGACTTGGAGATCTTGGATGTCAGGGGATGGGGATTCCTGTTGGTAAATTGGCTTTGTACACTGCACTAGGAGGAGTTCGTCCTTCAGCTTGTTTGCCTGTCACTATCGATGTGGGGACAAATAATGAGACATTACTGAAGGATGAATTTTACATTGGGCTTAGACAAAAAAGGGCAACTGGGCAGGAATATTACGACCTTCTGGATGAGTTCATGACTGCTGTGAAGCAAAATTACGGAGAAAAAGTTCTTGTACAGTTTGAAGACTTTGCGAATCACAATGCTTTTGAGTTGCTCGCTAAATATGGTACAACACATCTTGTTTTCAACGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGGACCTTACCTGAGCACAAATTCCTCTTTCTCGGTGCTGGAGAAGCTGGAACTGGTATAGCAGAGTTAATAGCTCTTGAGATGTCAAAGCAGACTAAGGCACCCATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCCCGGAAAAATTCACTTCAACACTTCAAGAAGCCCTGGGCTCATGAACATGAGCCAGTCAACAGTCTCCTAGAAGCCGTCAAGGTGATCAAGCCTACAGTTTTGATTGGATCCTCTGGTGTGGGAAAAACATTTACAAAGGAAGTGGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACTGCTGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTCGCTAGTGGTAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTACGCTTCTGGACAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCTATTCGAGTACATGATGATATGCTTCTAGCAGCTTCTGAAGCCTTGGCAACACAAGTGAGCGAGGAGAACTACAAAAATGGTTTGATTTACCCACCATTCTCTAATATCAGAAAAATCTCAGCAAATATAGCAGCAAATGTTGCTGCCAAGGCCTATGAACTAGGCTTGGCCACTCGTCTTCCACGACCTCAGGATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCCCTGTATACCGCAACTATAGGTGA 2010 0.4453 MISLNTANLMGHGCSKNLGISGWCGGDKRKISEKVVLRVNSKVREHNNIHNTGKEEEGEEKKVIGRKMESVLKPLRDGESVLDLSPRSTVSGGVEDVYGEDRATEDQLVTPWTISVASGWSLLRDPQYNKGLAFSEKERDAHYLRGLLPPTVLTQLLQEKKLMHNIRQYKVPLQKYVAMMELQARISTFCCCIQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKERGKVLEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNETLLKDEFYIGLRQKRATGQEYYDLLDEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHKFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGKTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALATQVSEENYKNGLIYPPFSNIRKISANIAANVAAKAYELGLATRLPRPQDLVKYAESCMYTPVYRNYR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04665 669 CDD NAD_bind_1_malic_enz 385 663 - -
Vimu11g04665 669 Gene3D - 383 669 - -
Vimu11g04665 669 PANTHER MALIC ENZYME-RELATED 85 668 - -
Vimu11g04665 669 Pfam Malic enzyme, NAD binding domain 385 637 IPR012302 GO:0051287
Vimu11g04665 669 PIRSF ME 85 669 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 Gene3D - 117 382 IPR037062 GO:0004471
Vimu11g04665 669 ProSitePatterns Malic enzymes signature. 381 397 IPR015884 GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 381 397 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 356 374 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 200 224 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 260 289 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 296 318 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 412 428 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 PRINTS Malic enzyme signature 515 531 IPR001891 GO:0004470|GO:0004471
Vimu11g04665 669 FunFam Malic enzyme 383 669 - -
Vimu11g04665 669 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 96 384 IPR046346 -
Vimu11g04665 669 Pfam Malic enzyme, N-terminal domain 194 374 IPR012301 GO:0004471
Vimu11g04665 669 SMART malic_2 194 375 IPR012301 GO:0004471
Vimu11g04665 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 385 668 IPR036291 -
Vimu11g04665 669 SMART Malic_M_2 385 638 IPR012302 GO:0051287
Vimu11g04665 669 FunFam Malic enzyme 117 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04665 Vimu-Chr11 67081603 67086448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04665 K00029 - gmx:100782096 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04665 11 67081603 67086448 Vimu11g02887 11 48736625 48741947 ECH
Vimu11g04665 11 67081603 67086448 Vimu4g00272 4 1875028 1879842 ECH
Vimu11g04665 11 67081603 67086448 Vimu10g02701 10 38437818 38442486 ECH
Vimu11g04665 11 67081603 67086448 Vimu11g04665 11 67081603 67086448 ECH
Vimu11g04665 11 67081603 67086448 Vimu8g01346 8 19925322 19928880 PCT