Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04664 ATGGGTCGTCGTAAGATTGAAATTGCAGAGGTGAAGGATCCCAACAACAAACAGGTTACATTCTCCAAGCGCCGCTCAGGTTTGTTCAAAAAGGCATTCGAATTGTCTGTACTGTGCGGTGTAGAAGTTGCTGTTGTTATGTTCTCTCCTGGGAAAAAGCCTCACTCTTTTGGCCACCCAAGTGTTAATGTTGTTGCAGACAAATTTCTTTGGAAGAAGCAAACGTCAAATGTTGTCAGAGCAAATTATGTACGAGAAAATGACGCACCTAATGAAGTTGATGGCATGGAGAGGTTATGTCAACAGTTATCTGTGGTTGAAGTTCACATAAACGAGGAACACCAGAAGGCTACGGAACTTGACAAGATAGAGAAAGAACAAGAAGCTTCACATGCCCAAAACAAAGAATTGCAAAATTCACCAGTGCTCCAGCGTATGGTGGAAGATTATGTTGATGCGATCGAGGTCTCAGAGTCTATGTTGCTTCTGGCAAAAGAACCTGTAGTTGGAATATCAAATCGAACAATTACCAAGAGAAGAAGAAGAAGAAGGAATTGA 558 0.4176 MGRRKIEIAEVKDPNNKQVTFSKRRSGLFKKAFELSVLCGVEVAVVMFSPGKKPHSFGHPSVNVVADKFLWKKQTSNVVRANYVRENDAPNEVDGMERLCQQLSVVEVHINEEHQKATELDKIEKEQEASHAQNKELQNSPVLQRMVEDYVDAIEVSESMLLLAKEPVVGISNRTITKRRRRRRN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04664 185 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Vimu11g04664 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu11g04664 185 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Vimu11g04664 185 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Vimu11g04664 185 PANTHER MADS BOX PROTEIN 3 131 - -
Vimu11g04664 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vimu11g04664 185 Coils Coil 120 140 - -
Vimu11g04664 185 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vimu11g04664 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu11g04664 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu11g04664 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu11g04664 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04664 Vimu-Chr11 67079844 67080401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04664 1 122 Type I MADS-box Gene Family AT3G66656 42.857 1.77e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu11g04664 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04664 - - var:108346565 315.079