Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04663 ATGGGTCGTCGTAAGATTGAGATCACGGAAGTGAAGGACCCCAACACCAAGCAAGTGACATTTTCGAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAACGAATTATCAATTTTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTTTCTCCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATATTGTTGCAGACAAGTTTCTGCAACAAGAAAGTGCATCAGATGTTGTTGTCAAACCTAATGTTGTCGAAGGAAATAGTTCAGCTAATGATGACAACATAGATGCGCTGAATCAACAGTTGTCTGGTGTTCAAACTCTCATAAGCGAGGAACATAAGAAGGCTGTTGAACTTGACAGGAGAAAGAAGCAACAAGATGTGACTAAACTTACCTACAGCAAACAGTTGCAACGTTCATACCTAAGGGTTCAGCGTAAGGTGGAGGACTATCTTGATGCCATTGAAGTGTCAGAGTATATGCTGCTTCTTGCAAAAGAACCTGTAATTGGAATAACTGCAAAAAGAAGAAAGAATTGA 543 0.4088 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDIVADKFLQQESASDVVVKPNVVEGNSSANDDNIDALNQQLSGVQTLISEEHKKAVELDRRKKQQDVTKLTYSKQLQRSYLRVQRKVEDYLDAIEVSEYMLLLAKEPVIGITAKRRKN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04663 180 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vimu11g04663 180 PANTHER MADS BOX PROTEIN 3 126 - -
Vimu11g04663 180 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Vimu11g04663 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu11g04663 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu11g04663 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu11g04663 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vimu11g04663 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu11g04663 180 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Vimu11g04663 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu11g04663 180 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04663 Vimu-Chr11 67073103 67073645 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04663 1 69 Type I MADS-box Gene Family AT3G66656 72.464 2.50e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu11g04663 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04663 - - gmx:100790601 234.187