Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04662 ATGGATGACAACAACGCTATTGATAGGATTTCAGAGAACAGCGATGATATTACGATGATGATGGTATCGCCGGTGACAATGGTGAACAATTTCATAGACTTGGGTGGTTTTGATCTGGACGAGGCTCTTGCGGTGGTGGAGGGAGAATCAGGGTGTGTAGTGGCAACGTGCAAGAGCTACGTGTCGAAGTTGCCGACGGTGAACGAGGTGAGAAGGGACGAGGTTTGCTCCGTTTGCATGGAGGGGTTCAGCCGGCACAACGGGGAAGGGGAAAACAAGCGAATCCCATGCGGCCACGTGTACCACTCAAGCTGCATCACCGTCTGGTTGGAGCACTGCAACTCCTGCCCCCTTTGCCGCCGCCTTATTTTATTCTAA 378 0.5238 MDDNNAIDRISENSDDITMMMVSPVTMVNNFIDLGGFDLDEALAVVEGESGCVVATCKSYVSKLPTVNEVRRDEVCSVCMEGFSRHNGEGENKRIPCGHVYHSSCITVWLEHCNSCPLCRRLILF 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04662 125 SMART ring_2 76 119 IPR001841 -
Vimu11g04662 125 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Vimu11g04662 125 SUPERFAMILY RING/U-box 69 124 - -
Vimu11g04662 125 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 61 121 - -
Vimu11g04662 125 Pfam Ring finger domain 76 120 IPR001841 -
Vimu11g04662 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 123 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04662 28 120 C3H Transcription Factor Family AT5G01980 39.796 7.52e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04662 K22378 - gmx:102669154 154.066