Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04659 ATGGAGGAGGACGACCTACTCGAACGACTCGACTTGGAGTTCGCGTCCACCAGTTCTGACTCCGTCATTTCCTCCACACTCAGAACCGAAGATTTCCGGAACCTCAACAGCTCCGGCGACATTTCCTCCATCAGTAGTGGCTCCGGCGAGATTCCTCCTGCTGCGGTCACCGAGGCGGTACTCTCGCCGCCTCCGCTGCACCGCGCGGGACTCAGTGACTGCGAGACTCCGGCGGTAAGGGAGAAGTGCATCGGAAGGAGTAACAAGGGAGTGAGTTGGGGACACACTTCAGTGATTGGAAGAAGGAAAGAGATGGAGGACGCCGTGGCAGTTATTCCCGGATTCATGTCTCGCACGTGCGATCACTTCGGCGGTTGTACCGCTCCCGGCTCCAGATCCTCCGGCAAGATCTCTCCCGTTCATTTCTTCGGCGTTTACGACGGCCATGGTGGCTCACAGGTGGCTAAGTTCTGTGCTAAGCGGATGCACGATGTTATAGCAGAGGAGTGGAACCGAGAAATGGCAGGTGGGGCTGAGTGGCAGAGAAGATGGGAAACCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCAGACGAAGTTGCACCTGAAATGGTAGGATCCACTGCATCTGTGGTGGTTCTATCTGGTTGCCAAATTATTGCATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACTATCCCCTTGTCAGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGTTACAGAAACTATACGGACAGTCTTCCAAATTGAGCTAGTATTTGGACATCTTGAAAACAAGTCGATGACTTGTCCTGTATCTGACCTGCTTAACGATGATGTTTCAGGTGATCGGTATTTGAGACCATGGATTATTCCCGTGCCTGAGATAACTTTCACAGCTAGGACAGACGAGGATGAGTGCTTAATTTTGGCAAGCGACGGACTCTGGGATGTAATGAGCAATGAAGAGGTTGGAGAAGTGGCACGCCACATTCTTAGAAGACGACGCAGATCCTTGTCAGTGGAGGAACCGTCTCCTGCACAAGCTGTTGCCGACAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCCAAGAGAAAACGTCAGCAAAGGCCTCCTTTAATTTCCTAA 1284 0.5 MEEDDLLERLDLEFASTSSDSVISSTLRTEDFRNLNSSGDISSISSGSGEIPPAAVTEAVLSPPPLHRAGLSDCETPAVREKCIGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCDHFGGCTAPGSRSSGKISPVHFFGVYDGHGGSQVAKFCAKRMHDVIAEEWNREMAGGAEWQRRWETVFANSFERTDNEILSDEVAPEMVGSTASVVVLSGCQIIASNCGDSRVVLCRRTQTIPLSVDQKPDRQDELLRIEGEGGKVINWNGARVFGVLAMSRAIVTETIRTVFQIELVFGHLENKSMTCPVSDLLNDDVSGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMSNEEVGEVARHILRRRRRSLSVEEPSPAQAVADSLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPPLIS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04659 427 PANTHER PROTEIN PHOSPHATASE 78 413 IPR015655 GO:0004722|GO:0006470
Vimu11g04659 427 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vimu11g04659 427 SMART PP2C_4 82 411 IPR001932 -
Vimu11g04659 427 CDD PP2Cc 94 413 IPR001932 -
Vimu11g04659 427 Pfam Protein phosphatase 2C 100 406 IPR001932 -
Vimu11g04659 427 SUPERFAMILY PP2C-like 80 414 IPR036457 -
Vimu11g04659 427 ProSiteProfiles PPM-type phosphatase domain profile. 92 413 IPR001932 -
Vimu11g04659 427 Gene3D - 82 423 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04659 Vimu-Chr11 67048575 67057749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04659 93 423 PP2C-type Phosphatase Gene Family AT4G26080 46.154 3.87e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04659 K14497 - gmx:100782634 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04659 11 67048575 67057749 Vimu11g04659 11 67048575 67057749 ECH