Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04645 ATGGAGAAAACCATTAGGTGGTTGAAGGGATTGTTCGGGATAAAGACTGACAGAGCGCGAAGAGAAAATTCAAATCCTGGCTCCAAATGGTGTCACTCAGACAGAGATTCCAGAAGTTTATGTCATAATCCTACCACCATTCCTCCCAATATTTCACCTGCTGAAGCTGCTTGGCTACAATCCTTCTACTCAGAAACTGAGAAGGAGCAGAACAAGCATGCCATTGCAGTTGCGGTAGCTACTGCAGCAGCGGCTAATGCGGCGGTGGCTGCGGCTCAGGCTGCCGTGGCAGTGGTTAGATTAACCAGTCATGACAATGGCAGAGACACTATGTTTGATGGTGGACAAGAAAAGTTGGCTGTTGTCAAGATTCAAACTGTGTTTAGAGGATACTTGGCAAGGAAGGCATTGAGAGCTTTAAAAGGATTGGTGAAGTTACAAGCACTAGTGAGAGGGTACTTGGTGCGGAAGCAAGCGGCAGCAACCTTACTCAGCATGCAGGCTCTAATTAGAGCTCAAGCCACAGTAAGATCTAAGAAATCTCAGGGACTCATGAGCACAAAGAATGAAGCACACAGGTTTCAAACACAAGCACGAAAATCCATGGTAGTATTTGATTGTTGTCACAATGTTTTGCAGGAGAGATTTGAAGACATACAGAGTGAGTACATAGCTCCCGTCCACAGCAGAAGGCTGTCATCTTCCTTTGATGCCACAATGAATAATGCAAACAACAGTTTTGATGGGAGCCCCAAAATAGTGGAAGTGGACACTGGTAGGCCAAAGTCAAGGTCTCGCAGGAGCAACACATCAATGTCAGATTTTGGTGATGACCCATCATTTCATACACTTCCTTCTTCTGTCCCATTCAATCATTTATCCATACCGAACCACAGGACTTTCCTGGATTCAGAGTGGGGTTTAACAGGAGAAGAGTGCAGATTTTCAACAGCACAAAGCACTCCACGCTTCACCACCAACTCTTGTAGCTGTGGCTCTCTTGTTGTTGCCCCTATGACACCTAAAAGTGTTTGTAATGAAAACTTCTTCTATGGGCAGTACCACAATTTTCCAAACTACATGGCCAGCACTCAGTCTTTCAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAGCGTCCAGATCCTGGTTCAAAGAAGAAATTTACCCTCAATGAGATGATGGAGTCCAGGAGTATTTTAAGTGGGGCTAGAATGCAAAGGTCTTGCTCACAGATTCAAGAAGCCATTAATTTTAAGAATGCTGTGATGAGTAAGCTTCAGAAATCCACAGAATTTGGTAGGGAGACAACACCAACTTTTCCAACCAGAGGAGGTGGCGATTGGTGA 1350 0.4496 MEKTIRWLKGLFGIKTDRARRENSNPGSKWCHSDRDSRSLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAVATAAAANAAVAAAQAAVAVVRLTSHDNGRDTMFDGGQEKLAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQAAATLLSMQALIRAQATVRSKKSQGLMSTKNEAHRFQTQARKSMVVFDCCHNVLQERFEDIQSEYIAPVHSRRLSSSFDATMNNANNSFDGSPKIVEVDTGRPKSRSRRSNTSMSDFGDDPSFHTLPSSVPFNHLSIPNHRTFLDSEWGLTGEECRFSTAQSTPRFTTNSCSCGSLVVAPMTPKSVCNENFFYGQYHNFPNYMASTQSFKAKLRSHSAPKQRPDPGSKKKFTLNEMMESRSILSGARMQRSCSQIQEAINFKNAVMSKLQKSTEFGRETTPTFPTRGGGDW 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04645 449 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Vimu11g04645 449 Pfam IQ calmodulin-binding motif 144 158 IPR000048 GO:0005515
Vimu11g04645 449 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Vimu11g04645 449 Gene3D - 116 163 - -
Vimu11g04645 449 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Vimu11g04645 449 SMART iq_5 116 138 IPR000048 GO:0005515
Vimu11g04645 449 SMART iq_5 139 160 IPR000048 GO:0005515
Vimu11g04645 449 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Vimu11g04645 449 MobiDBLite consensus disorder prediction 18 37 - -
Vimu11g04645 449 MobiDBLite consensus disorder prediction 243 280 - -
Vimu11g04645 449 Pfam Protein of unknown function (DUF4005) 322 403 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04645 Vimu-Chr11 66964008 66965789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04645 1 406 IQD Protein Family AT3G16490 47.561 9.14e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04645 - - gmx:100800892 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04645 11 66964008 66965789 Vimu11g04645 11 66964008 66965789 ECH